ENSCJAG00000016916 (Callithrix jacchus)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSCJAG00000016916 T164476_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LIN28B
M04663_2.00 		Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX 		0.742 0.742
LIN28B
M04664_2.00 		Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX 		0.742 0.742
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000031118 CSD 40 113

Links

Other CSD family TFs
Other Callithrix jacchus TFs

134 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OS08G0432800 Oryza sativa OS08G0432800 I
OGLUM08G16400 Oryza glumaepatula OGLUM08G16400 I
OMERI08G12930 Oryza meridionalis OMERI08G12930 I
OMERI09G07780 Oryza meridionalis OMERI09G07780 I
ONIVA08G16750 Oryza nivara ONIVA08G16750 I
ONIVA09G09550 Oryza nivara ONIVA09G09550 I
OPUNC08G13730 Oryza punctata OPUNC08G13730 I
ORGLA08G0137400 Oryza glaberrima ORGLA08G0137400 I
ORUFI08G17560 Oryza rufipogon ORUFI08G17560 I
ORUFI09G10670 Oryza rufipogon ORUFI09G10670 I
AMTR_s00002p00019320 Amborella trichopoda AMTR_s00002p00019320 I
OS09G0410700 Oryza sativa OS09G0410700 I
Lus10003471.g Linum usitatissimum Lus10003471.g I
Sb07g021170 Sorghum bicolor Sb07g021170 I
Si013911m.g Setaria italica Si013911m.g I
Traes_4AS_DD16F89E7 Triticum aestivum Traes_4AS_DD16F89E7 I
Traes_4BL_A2B32FCEE Triticum aestivum Traes_4BL_A2B32FCEE I
Traes_4DL_7BD3165FB Triticum aestivum Traes_4DL_7BD3165FB I
TRIUR3_31897 Triticum urartu TRIUR3_31897 I
Lus10015734.g Linum usitatissimum Lus10015734.g I
MLOC_66385 Hordeum vulgare MLOC_66385 I
OBART08G15650 Oryza barthii OBART08G15650 I
LPERR09G06880 Leersia perrieri LPERR09G06880 I
LPERR08G12910 Leersia perrieri LPERR08G12910 I
GRMZM2G526668 Zea mays GRMZM2G526668 I
GRMZM2G107276 Zea mays GRMZM2G107276 I
F775_10096 Aegilops tauschii F775_10096 I
BGIOSGA026937 Oryza indica BGIOSGA026937 I
BGIOSGA029777 Oryza indica BGIOSGA029777 I
Cla022500 Citrullus lanatus Cla022500 N
29908.m006255 Ricinus communis 29908.m006255 N
PK01498.1 Cannabis sativa PK01498.1 N
cassava34286.m1 Manihot esculenta cassava34286.m1 N
Al_scaffold_0007_233 Arabidopsis lyrata Al_scaffold_0007_233 N
Aquca_007_00571 Aquilegia coerulea Aquca_007_00571 N
Ciclev10002205m.g Citrus clementina Ciclev10002205m.g N
Thhalv10027500m.g Eutrema salsugineum Thhalv10027500m.g N
Pavir.Bb02155 Panicum virgatum Pavir.Bb02155 N
gene20797-v1.0-hybrid Fragaria vesca gene20797-v1.0-hybrid N
Gorai.009G230000 Gossypium raimondii Gorai.009G230000 N
Pavir.Ba01821 Panicum virgatum Pavir.Ba01821 N
orange1.1g024930m.g Citrus sinensis orange1.1g024930m.g N
MDP0000562627 Malus domestica MDP0000562627 N
Lus10042017.g Linum usitatissimum Lus10042017.g N
Ca_14981 Cicer arietinum Ca_14981 N
VIT_18s0001g07410 Vitis vinifera VIT_18s0001g07410 N
Traes_5BL_CF90A7CAE Triticum aestivum Traes_5BL_CF90A7CAE N
Solyc04g014360.2 Solanum lycopersicum Solyc04g014360.2 N
Si030496m.g Setaria italica Si030496m.g N
Sb02g024460 Sorghum bicolor Sb02g024460 N
PRUPE_ppa026166mg Prunus persica PRUPE_ppa026166mg N
PGSC0003DMG400023577 Solanum tuberosum PGSC0003DMG400023577 N
MTR_5g066080 Medicago truncatula MTR_5g066080 N
MLOC_12832 Hordeum vulgare MLOC_12832 N
GRMZM2G176141 Zea mays GRMZM2G176141 N
GLYMA14G36010 Glycine max GLYMA14G36010 N
GLYMA02G37720 Glycine max GLYMA02G37720 N
BRADI4G29990 Brachypodium distachyon BRADI4G29990 N
BRADI3G36610 Brachypodium distachyon BRADI3G36610 N
BHLH131 Arabidopsis thaliana AT4G38070 N