LIN28B (Cavia porcellus)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSCPOG00000006178 T164491_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LIN28B
M04663_2.00 		Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX 		0.985 0.985
LIN28B
M04664_2.00 		Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX 		0.985 0.985
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000005571 CSD 56 128

Links

Other CSD family TFs
Other Cavia porcellus TFs

134 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CUX1 Canis familiaris ENSCAFG00000013749 D 0.000
CUX2 Homo sapiens ENSG00000111249 D 0.000
CUX1 Homo sapiens ENSG00000257923 D 0.000
Cux1 Mus musculus ENSMUSG00000029705 D 0.000
Cux2 Mus musculus ENSMUSG00000042589 D 0.000
CUX2 Anolis carolinensis ENSACAG00000002281 I 0.000
CUX1 Anolis carolinensis ENSACAG00000015088 I 0.000
ENSAMEG00000013799 Ailuropoda melanoleuca ENSAMEG00000013799 I 0.000
ENSAMEG00000015392 Ailuropoda melanoleuca ENSAMEG00000015392 I 0.000
ENSAMXG00000006105 Astyanax mexicanus ENSAMXG00000006105 I 0.000
ENSAMXG00000008817 Astyanax mexicanus ENSAMXG00000008817 I 0.000
ENSAPLG00000002588 Anas platyrhynchos ENSAPLG00000002588 I 0.000
ENSAPLG00000004382 Anas platyrhynchos ENSAPLG00000004382 I 0.000
CUX2 Bos taurus ENSBTAG00000008571 I 0.000
CUX1 Bos taurus ENSBTAG00000010659 I 0.000
CUX2 Canis familiaris ENSCAFG00000008575 I 0.000
CUX2 Callithrix jacchus ENSCJAG00000011694 I 0.000
CUX1 Callithrix jacchus ENSCJAG00000016076 I 0.000
CUX2 Cavia porcellus ENSCPOG00000020483 I 0.000
ENSCSAG00000018062 Chlorocebus sabaeus ENSCSAG00000018062 I 0.000
cux1a Danio rerio ENSDARG00000078459 I 0.000
cux2b Danio rerio ENSDARG00000086345 I 0.000
CUX2 Dasypus novemcinctus ENSDNOG00000039959 I 0.000
CUX1 Erinaceus europaeus ENSEEUG00000005128 I 0.000
ENSFALG00000009019 Ficedula albicollis ENSFALG00000009019 I 0.000
ENSFALG00000009409 Ficedula albicollis ENSFALG00000009409 I 0.000
CUX2 Felis catus ENSFCAG00000003176 I 0.000
CUX1 Felis catus ENSFCAG00000008074 I 0.000
ENSGACG00000009915 Gasterosteus aculeatus ENSGACG00000009915 I 0.000
cux2b Gasterosteus aculeatus ENSGACG00000013522 I 0.000
ENSGALG00000001807 Gallus gallus ENSGALG00000001807 I 0.000
CUX2 Gallus gallus ENSGALG00000004598 I 0.000
CUX2 Gorilla gorilla ENSGGOG00000012173 I 0.000
ENSGMOG00000008990 Gadus morhua ENSGMOG00000008990 I 0.000
ENSGMOG00000017485 Gadus morhua ENSGMOG00000017485 I 0.000
ENSLACG00000014413 Latimeria chalumnae ENSLACG00000014413 I 0.000
ENSLACG00000017710 Latimeria chalumnae ENSLACG00000017710 I 0.000
CUX2 Loxodonta africana ENSLAFG00000001145 I 0.000
CUX1 Loxodonta africana ENSLAFG00000002555 I 0.000
ENSLOCG00000001531 Lepisosteus oculatus ENSLOCG00000001531 I 0.000
ENSLOCG00000007417 Lepisosteus oculatus ENSLOCG00000007417 I 0.000
ENSMEUG00000004239 Macropus eugenii ENSMEUG00000004239 I 0.000
ENSMEUG00000013552 Macropus eugenii ENSMEUG00000013552 I 0.000
CUX1 Meleagris gallopavo ENSMGAG00000003398 I 0.000
CUX2 Meleagris gallopavo ENSMGAG00000005225 I 0.000
CUX1 Microcebus murinus ENSMICG00000010274 I 0.000
CUX2 Myotis lucifugus ENSMLUG00000003239 I 0.000
CUX1 Myotis lucifugus ENSMLUG00000007264 I 0.000
CUX1 Macaca mulatta ENSMMUG00000021461 I 0.000
CUX2 Monodelphis domestica ENSMODG00000012254 I 0.000
CUX1 Monodelphis domestica ENSMODG00000013581 I 0.000
ENSMPUG00000002207 Mustela putorius furo ENSMPUG00000002207 I 0.000
ENSNLEG00000000470 Nomascus leucogenys ENSNLEG00000000470 I 0.000
ENSNLEG00000008310 Nomascus leucogenys ENSNLEG00000008310 I 0.000
CUX2 Ornithorhynchus anatinus ENSOANG00000004793 I 0.000
ENSOARG00000014629 Ovis aries ENSOARG00000014629 I 0.000
ENSOARG00000017879 Ovis aries ENSOARG00000017879 I 0.000
CUX2 Oryctolagus cuniculus ENSOCUG00000021923 I 0.000
ENSOGAG00000009038 Otolemur garnettii ENSOGAG00000009038 I 0.000
CUX2 Otolemur garnettii ENSOGAG00000029919 I 0.000
ENSONIG00000003797 Oreochromis niloticus ENSONIG00000003797 I 0.000
ENSONIG00000015972 Oreochromis niloticus ENSONIG00000015972 I 0.000
CUX1 Ochotona princeps ENSOPRG00000000165 I 0.000
CUX2 Ochotona princeps ENSOPRG00000006461 I 0.000
cux2b Oryzias latipes ENSORLG00000015973 I 0.000
ENSPANG00000011477 Papio anubis ENSPANG00000011477 I 0.000
ENSPANG00000016879 Papio anubis ENSPANG00000016879 I 0.000
ENSPFOG00000005210 Poecilia formosa ENSPFOG00000005210 I 0.000
ENSPSIG00000003536 Pelodiscus sinensis ENSPSIG00000003536 I 0.000
ENSPSIG00000008210 Pelodiscus sinensis ENSPSIG00000008210 I 0.000
CUX2 Pan troglodytes ENSPTRG00000005455 I 0.000
CUX1 Pan troglodytes ENSPTRG00000019531 I 0.000
CUX2 Pteropus vampyrus ENSPVAG00000013176 I 0.000
CUX1 Pteropus vampyrus ENSPVAG00000017756 I 0.000
Cux2 Rattus norvegicus ENSRNOG00000001259 I 0.000
Cux1 Rattus norvegicus ENSRNOG00000001424 I 0.000
ENSSHAG00000007801 Sarcophilus harrisii ENSSHAG00000007801 I 0.000
ENSSHAG00000009458 Sarcophilus harrisii ENSSHAG00000009458 I 0.000
CUX2 Sus scrofa ENSSSCG00000009831 I 0.000
ENSSTOG00000002242 Ictidomys tridecemlineatus ENSSTOG00000002242 I 0.000
ENSSTOG00000010390 Ictidomys tridecemlineatus ENSSTOG00000010390 I 0.000
CUX1 Taeniopygia guttata ENSTGUG00000004386 I 0.000
CUX2 Taeniopygia guttata ENSTGUG00000006470 I 0.000
ENSTNIG00000007722 Tetraodon nigroviridis ENSTNIG00000007722 I 0.000
cux2b Tetraodon nigroviridis ENSTNIG00000011453 I 0.000
CUX1 Takifugu rubripes ENSTRUG00000008546 I 0.000
cux2b Takifugu rubripes ENSTRUG00000015853 I 0.000
CUX2 Tursiops truncatus ENSTTRG00000000945 I 0.000
CUX1 Tursiops truncatus ENSTTRG00000014625 I 0.000
ENSXMAG00000004131 Xiphophorus maculatus ENSXMAG00000004131 I 0.000
ENSXMAG00000018520 Xiphophorus maculatus ENSXMAG00000018520 I 0.000
Aan_R003487 Calypte anna Aan_R003487 I 0.000
Aan_R010335 Calypte anna Aan_R010335 I 0.000
Afo_R009437 Aptenodytes forsteri Afo_R009437 I 0.000
Alligator_sinensis_CCG004936.1 Alligator sinensis Alligator_sinensis_CCG004936.1 I 0.000
Cmyd_10006308 Chelonia mydas Cmyd_10006308 I 0.000
Cmyd_10015658 Chelonia mydas Cmyd_10015658 I 0.000
ENSP00000261726-D1 Bos grunniens ENSP00000261726-D1 I 0.000
ENSP00000261726 Macaca fascicularis ENSP00000261726 I 0.000
ENSP00000353401-D1 Bos grunniens ENSP00000353401-D1 I 0.000
ENSP00000353401 Macaca fascicularis ENSP00000353401 I 0.000
Gfo_R003142 Geospiza fortis Gfo_R003142 I 0.000
Gfo_R011360 Geospiza fortis Gfo_R011360 I 0.000
Myotis_brandtii_CUX1_10015212 Myotis brandtii Myotis_brandtii_CUX1_10015212 I 0.000
Myotis_brandtii_CUX2_10011523 Myotis brandtii Myotis_brandtii_CUX2_10011523 I 0.000
Ogr05066 Ophisaurus gracilis Ogr05066 I 0.000
Ogr05872 Ophisaurus gracilis Ogr05872 I 0.000
Pvit_01819 Pogona vitticeps Pvit_01819 I 0.000
Pvit_05599 Pogona vitticeps Pvit_05599 I 0.000
Tal_R013483 Tyto alba Tal_R013483 I 0.000
cux2 Xenopus tropicalis XB-GENE-487236 I 0.000
XP_002942311 Xenopus tropicalis XP_002942311 I 0.000