LIN28B (Cavia porcellus)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSCPOG00000006178 T164491_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LIN28B
M04663_2.00 		Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX 		0.985 0.985
LIN28B
M04664_2.00 		Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX 		0.985 0.985
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000005571 CSD 56 128

Links

Other CSD family TFs
Other Cavia porcellus TFs

134 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000011453 Ailuropoda melanoleuca ENSAMEG00000011453 I 0.985
LIN28B Canis familiaris ENSCAFG00000003598 I 0.985
LIN28B Choloepus hoffmanni ENSCHOG00000001682 I 0.985
LIN28B Callithrix jacchus ENSCJAG00000001671 I 0.985
LIN28B Dasypus novemcinctus ENSDNOG00000015300 I 0.985
LIN28B Felis catus ENSFCAG00000005058 I 0.985
LIN28B Homo sapiens ENSG00000187772 D 0.985
LIN28B Gorilla gorilla ENSGGOG00000015437 I 0.985
LIN28B Loxodonta africana ENSLAFG00000017788 I 0.985
ENSMICG00000002297 Microcebus murinus ENSMICG00000002297 I 0.985
LIN28B Macaca mulatta ENSMMUG00000014470 I 0.985
ENSMPUG00000009489 Mustela putorius furo ENSMPUG00000009489 I 0.985
ENSNLEG00000014146 Nomascus leucogenys ENSNLEG00000014146 I 0.985
LIN28B Otolemur garnettii ENSOGAG00000011042 I 0.985
LIN28B Ochotona princeps ENSOPRG00000006333 I 0.985
ENSPANG00000005196 Papio anubis ENSPANG00000005196 I 0.985
ENSPPYG00000016875 Pongo abelii ENSPPYG00000016875 I 0.985
LIN28B Pan troglodytes ENSPTRG00000018453 I 0.985
LIN28B Pteropus vampyrus ENSPVAG00000008797 I 0.985
LIN28B Sorex araneus ENSSARG00000008374 I 0.985
ENSSTOG00000002692 Ictidomys tridecemlineatus ENSSTOG00000002692 I 0.985
LIN28B Tursiops truncatus ENSTTRG00000014919 I 0.985
ENSMMUP00000018998 Macaca fascicularis ENSMMUP00000018998 I 0.985
LIN28B Equus caballus ENSECAG00000020994 I 0.970
LIN28B Monodelphis domestica ENSMODG00000018035 I 0.970
ENSOARG00000011404 Ovis aries ENSOARG00000011404 I 0.970
ENSPSIG00000002635 Pelodiscus sinensis ENSPSIG00000002635 I 0.970
ENSSSCG00000004365 Sus scrofa ENSSSCG00000004365 I 0.970
ENSTSYG00000006480 Tarsius syrichta ENSTSYG00000006480 I 0.970
ENSBTAP00000053651-D1 Bos grunniens ENSBTAP00000053651-D1 I 0.970
Pvit_09294 Pogona vitticeps Pvit_09294 I 0.970
ENSAPLG00000014264 Anas platyrhynchos ENSAPLG00000014264 I 0.955
LIN28B Erinaceus europaeus ENSEEUG00000003632 I 0.955
LIN28B Echinops telfairi ENSETEG00000015340 I 0.955
ENSFALG00000011574 Ficedula albicollis ENSFALG00000011574 I 0.955
LIN28B Taeniopygia guttata ENSTGUG00000012225 I 0.955
Aan_R007025 Calypte anna Aan_R007025 I 0.955
Afo_R003680 Aptenodytes forsteri Afo_R003680 I 0.955
Gfo_R012200 Geospiza fortis Gfo_R012200 I 0.955
LIN28B Anolis carolinensis ENSACAG00000003957 I 0.939
LIN28B Ornithorhynchus anatinus ENSOANG00000010299 I 0.939
ENSLACG00000004053 Latimeria chalumnae ENSLACG00000004053 I 0.924
lin28b Xenopus tropicalis XB-GENE-1218969 I 0.924
LIN28B Gallus gallus ENSGALG00000026761 I 0.909
lin28b.S Xenopus laevis XB-GENE-1218973 I 0.909
ENSLACG00000002747 Latimeria chalumnae ENSLACG00000002747 I 0.894
ENSLOCG00000003353 Lepisosteus oculatus ENSLOCG00000003353 I 0.894
ENSPFOG00000014054 Poecilia formosa ENSPFOG00000014054 I 0.894
si:ch1073-284b18.2 Takifugu rubripes ENSTRUG00000006069 I 0.894
ENSLOCG00000016539 Lepisosteus oculatus ENSLOCG00000016539 I 0.879
Lin28b Mus musculus ENSMUSG00000063804 I 0.879
LIN28B Oryzias latipes ENSORLG00000012891 I 0.879
si:ch1073-284b18.2 Oryzias latipes ENSORLG00000014369 I 0.879
Lin28b Rattus norvegicus ENSRNOG00000025938 I 0.879
LIN28B Takifugu rubripes ENSTRUG00000008428 I 0.879
ENSXMAG00000014593 Xiphophorus maculatus ENSXMAG00000014593 I 0.879
Aan_R002277 Calypte anna Aan_R002277 I 0.879
Alligator_sinensis_CCG010967.1 Alligator sinensis Alligator_sinensis_CCG010967.1 I 0.879
ENSAMXG00000001433 Astyanax mexicanus ENSAMXG00000001433 I 0.864
ENSAMXG00000001573 Astyanax mexicanus ENSAMXG00000001573 I 0.864
ENSAMXG00000016813 Astyanax mexicanus ENSAMXG00000016813 I 0.864
lin28a Danio rerio ENSDARG00000016999 I 0.864
LIN28B Gasterosteus aculeatus ENSGACG00000009428 I 0.864
ENSONIG00000016204 Oreochromis niloticus ENSONIG00000016204 I 0.864
ENSPFOG00000019352 Poecilia formosa ENSPFOG00000019352 I 0.864
LIN28B Tetraodon nigroviridis ENSTNIG00000012302 I 0.864
Cmyd_10009744 Chelonia mydas Cmyd_10009744 I 0.864
ENSAMEG00000010582 Ailuropoda melanoleuca ENSAMEG00000010582 I 0.848
ENSAMXG00000001888 Astyanax mexicanus ENSAMXG00000001888 I 0.848
ENSBTAG00000040497 Bos taurus ENSBTAG00000040497 I 0.848
LIN28A Canis familiaris ENSCAFG00000012488 I 0.848
LIN28A Callithrix jacchus ENSCJAG00000009796 I 0.848
ENSCSAG00000000975 Chlorocebus sabaeus ENSCSAG00000000975 I 0.848
LIN28A Danio rerio ENSDARG00000004328 I 0.848
lin28b Danio rerio ENSDARG00000052511 I 0.848
LIN28A Dasypus novemcinctus ENSDNOG00000010710 I 0.848
LIN28A Equus caballus ENSECAG00000020267 I 0.848
ENSFALG00000000374 Ficedula albicollis ENSFALG00000000374 I 0.848
LIN28A Felis catus ENSFCAG00000012810 I 0.848
LIN28A Homo sapiens ENSG00000131914 I 0.848
si:ch1073-284b18.2 Gasterosteus aculeatus ENSGACG00000013893 I 0.848
ENSGALG00000000388 Gallus gallus ENSGALG00000000388 I 0.848
LIN28A Gorilla gorilla ENSGGOG00000024918 I 0.848
ENSGMOG00000010704 Gadus morhua ENSGMOG00000010704 I 0.848
LIN28A Loxodonta africana ENSLAFG00000017525 I 0.848
ENSMEUG00000008743 Macropus eugenii ENSMEUG00000008743 I 0.848
LIN28A Meleagris gallopavo ENSMGAG00000009456 I 0.848
ENSMLUG00000010158 Myotis lucifugus ENSMLUG00000010158 I 0.848
ENSMPUG00000015724 Mustela putorius furo ENSMPUG00000015724 I 0.848
Lin28a Mus musculus ENSMUSG00000050966 I 0.848
ENSNLEG00000009294 Nomascus leucogenys ENSNLEG00000009294 I 0.848
ENSOARG00000004614 Ovis aries ENSOARG00000004614 I 0.848
ENSOCUG00000000299 Oryctolagus cuniculus ENSOCUG00000000299 I 0.848
ENSOCUG00000027473 Oryctolagus cuniculus ENSOCUG00000027473 I 0.848
ENSOCUG00000027786 Oryctolagus cuniculus ENSOCUG00000027786 I 0.848
LIN28A Otolemur garnettii ENSOGAG00000003971 I 0.848
LIN28A Ochotona princeps ENSOPRG00000001591 I 0.848
ENSPANG00000009841 Papio anubis ENSPANG00000009841 I 0.848
ENSPPYG00000001684 Pongo abelii ENSPPYG00000001684 I 0.848
LIN28A Pteropus vampyrus ENSPVAG00000017267 I 0.848
Lin28a Rattus norvegicus ENSRNOG00000060320 I 0.848
LIN28A Sus scrofa ENSSSCG00000003557 I 0.848
ENSSTOG00000004329 Ictidomys tridecemlineatus ENSSTOG00000004329 I 0.848
ENSTSYG00000011513 Tarsius syrichta ENSTSYG00000011513 I 0.848
LIN28A Tursiops truncatus ENSTTRG00000005678 I 0.848
ENSVPAG00000008073 Vicugna pacos ENSVPAG00000008073 I 0.848
ENSXMAG00000003450 Xiphophorus maculatus ENSXMAG00000003450 I 0.848
Aan_R005866 Calypte anna Aan_R005866 I 0.848
ENSBTAP00000004196-D2 Bos grunniens ENSBTAP00000004196-D2 I 0.848
ENSP00000254231 Macaca fascicularis ENSP00000254231 I 0.848
Myotis_brandtii_Lin28a_10029661 Myotis brandtii Myotis_brandtii_Lin28a_10029661 I 0.848
Pvit_17184 Pogona vitticeps Pvit_17184 I 0.848
yakG040859 Bos grunniens yakG040859 I 0.848
lin28a Xenopus tropicalis XB-GENE-491384 I 0.848
ENSBTAG00000048256 Bos taurus ENSBTAG00000048256 I 0.833
ENSCPOG00000024027 Cavia porcellus ENSCPOG00000024027 I 0.833
LIN28A Monodelphis domestica ENSMODG00000014236 I 0.833
LIN28A Pan troglodytes ENSPTRG00000000384 I 0.833
ENSCJAG00000022770 Callithrix jacchus ENSCJAG00000022770 I 0.818
ENSCSAG00000014708 Chlorocebus sabaeus ENSCSAG00000014708 I 0.818
lin28a Gasterosteus aculeatus ENSGACG00000007826 I 0.818
ENSGMOG00000015660 Gadus morhua ENSGMOG00000015660 I 0.818
LIN28B Oryctolagus cuniculus ENSOCUG00000017850 I 0.818
Myotis_brandtii_LIN28B_10034705 Myotis brandtii Myotis_brandtii_LIN28B_10034705 I 0.818
lin28a.S Xenopus laevis XB-GENE-866059 I 0.818
ENSOARG00000003913 Ovis aries ENSOARG00000003913 I 0.803
ENSGMOG00000015523 Gadus morhua ENSGMOG00000015523 I 0.788
lin28a Takifugu rubripes ENSTRUG00000009454 I 0.773
ENSCJAG00000021979 Callithrix jacchus ENSCJAG00000021979 I 0.758
LIN28A Erinaceus europaeus ENSEEUG00000012085 I 0.758
lin28a Tetraodon nigroviridis ENSTNIG00000009802 I 0.758
ENSONIG00000014706 Oreochromis niloticus ENSONIG00000014706 I 0.742
ENSCJAG00000016916 Callithrix jacchus ENSCJAG00000016916 I 0.727
ENSOCUG00000011640 Oryctolagus cuniculus ENSOCUG00000011640 I 0.727