si:ch1073-284b18.2 (Gasterosteus aculeatus)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSGACG00000013893 T164575_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LIN28B
M04663_2.00 		Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX 		0.862 0.862
LIN28B
M04664_2.00 		Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX 		0.862 0.862
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000018348 CSD 35 106

Links

Other CSD family TFs
Other Gasterosteus aculeatus TFs

146 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSONIG00000016204 Oreochromis niloticus ENSONIG00000016204 I 0.954
ENSXMAG00000014593 Xiphophorus maculatus ENSXMAG00000014593 I 0.954
ENSACAG00000017764 Anolis carolinensis ENSACAG00000017764 I 0.946
ENSTGUG00000001037 Taeniopygia guttata ENSTGUG00000001037 I 0.946
Afo_R008930 Aptenodytes forsteri Afo_R008930 I 0.946
Brh_R006709 Buceros rhinoceros Brh_R006709 I 0.946
Gfo_R011576 Geospiza fortis Gfo_R011576 I 0.946
Pvit_17184 Pogona vitticeps Pvit_17184 I 0.938
Lin28a Mus musculus ENSMUSG00000050966 I 0.927
ENSPFOG00000014054 Poecilia formosa ENSPFOG00000014054 I 0.924
si:ch1073-284b18.2 Takifugu rubripes ENSTRUG00000006069 I 0.924
Alligator_sinensis_CCG010967.1 Alligator sinensis Alligator_sinensis_CCG010967.1 I 0.924
ENSAMEG00000010582 Ailuropoda melanoleuca ENSAMEG00000010582 I 0.923
ENSAMXG00000001573 Astyanax mexicanus ENSAMXG00000001573 I 0.923
ENSBTAG00000040497 Bos taurus ENSBTAG00000040497 I 0.923
LIN28A Canis familiaris ENSCAFG00000012488 I 0.923
LIN28A Callithrix jacchus ENSCJAG00000009796 I 0.923
ENSCSAG00000000975 Chlorocebus sabaeus ENSCSAG00000000975 I 0.923
LIN28A Dasypus novemcinctus ENSDNOG00000010710 I 0.923
LIN28A Equus caballus ENSECAG00000020267 I 0.923
ENSFALG00000000374 Ficedula albicollis ENSFALG00000000374 I 0.923
LIN28A Felis catus ENSFCAG00000012810 I 0.923
LIN28A Homo sapiens ENSG00000131914 I 0.923
ENSGALG00000000388 Gallus gallus ENSGALG00000000388 I 0.923
LIN28A Gorilla gorilla ENSGGOG00000024918 I 0.923
LIN28A Loxodonta africana ENSLAFG00000017525 I 0.923
ENSMEUG00000008743 Macropus eugenii ENSMEUG00000008743 I 0.923
LIN28A Meleagris gallopavo ENSMGAG00000009456 I 0.923
ENSMLUG00000010158 Myotis lucifugus ENSMLUG00000010158 I 0.923
ENSMPUG00000015724 Mustela putorius furo ENSMPUG00000015724 I 0.923
ENSNLEG00000009294 Nomascus leucogenys ENSNLEG00000009294 I 0.923
ENSOARG00000004614 Ovis aries ENSOARG00000004614 I 0.923
ENSOCUG00000000299 Oryctolagus cuniculus ENSOCUG00000000299 I 0.923
ENSOCUG00000027473 Oryctolagus cuniculus ENSOCUG00000027473 I 0.923
ENSOCUG00000027786 Oryctolagus cuniculus ENSOCUG00000027786 I 0.923
LIN28A Otolemur garnettii ENSOGAG00000003971 I 0.923
LIN28A Ochotona princeps ENSOPRG00000001591 I 0.923
ENSPANG00000009841 Papio anubis ENSPANG00000009841 I 0.923
ENSPPYG00000001684 Pongo abelii ENSPPYG00000001684 I 0.923
LIN28A Pteropus vampyrus ENSPVAG00000017267 I 0.923
Lin28a Rattus norvegicus ENSRNOG00000060320 I 0.923
LIN28A Sus scrofa ENSSSCG00000003557 I 0.923
ENSSTOG00000004329 Ictidomys tridecemlineatus ENSSTOG00000004329 I 0.923
ENSTSYG00000011513 Tarsius syrichta ENSTSYG00000011513 I 0.923
LIN28A Tursiops truncatus ENSTTRG00000005678 I 0.923
ENSVPAG00000008073 Vicugna pacos ENSVPAG00000008073 I 0.923
Aan_R005866 Calypte anna Aan_R005866 I 0.923
Cmyd_10009744 Chelonia mydas Cmyd_10009744 I 0.923
ENSBTAP00000004196-D2 Bos grunniens ENSBTAP00000004196-D2 I 0.923
ENSP00000254231 Macaca fascicularis ENSP00000254231 I 0.923
Myotis_brandtii_Lin28a_10029661 Myotis brandtii Myotis_brandtii_Lin28a_10029661 I 0.923
Ogr09706 Ophisaurus gracilis Ogr09706 I 0.919
si:ch1073-284b18.2 Oryzias latipes ENSORLG00000014369 I 0.909
ENSGMOG00000015660 Gadus morhua ENSGMOG00000015660 I 0.908
LIN28A Pan troglodytes ENSPTRG00000000384 I 0.908
Ogr14286 Ophisaurus gracilis Ogr14286 I 0.906
LIN28A Choloepus hoffmanni ENSCHOG00000002073 I 0.900
lin28a Danio rerio ENSDARG00000016999 I 0.895
ENSCPOG00000024027 Cavia porcellus ENSCPOG00000024027 I 0.894
ENSLACG00000002747 Latimeria chalumnae ENSLACG00000002747 I 0.894
yakG040859 Bos grunniens yakG040859 I 0.894
LIN28B Bos taurus ENSBTAG00000043973 I 0.892
LIN28A Danio rerio ENSDARG00000004328 I 0.892
ENSLOCG00000003353 Lepisosteus oculatus ENSLOCG00000003353 I 0.892
LIN28B Myotis lucifugus ENSMLUG00000006883 I 0.892
ENSBTAG00000048256 Bos taurus ENSBTAG00000048256 I 0.879
ENSCJAG00000022770 Callithrix jacchus ENSCJAG00000022770 I 0.879
LIN28A Monodelphis domestica ENSMODG00000014236 I 0.879
LIN28B Erinaceus europaeus ENSEEUG00000003632 I 0.877
ENSLACG00000004053 Latimeria chalumnae ENSLACG00000004053 I 0.877
ENSCSAG00000014708 Chlorocebus sabaeus ENSCSAG00000014708 I 0.873
LIN28B Oryctolagus cuniculus ENSOCUG00000017850 I 0.873
Myotis_brandtii_LIN28B_10034705 Myotis brandtii Myotis_brandtii_LIN28B_10034705 I 0.873
LIN28B Meleagris gallopavo ENSMGAG00000013531 I 0.865
lin28a Xenopus tropicalis XB-GENE-491384 I 0.864
LIN28B Anolis carolinensis ENSACAG00000003957 I 0.862
ENSOARG00000003913 Ovis aries ENSOARG00000003913 I 0.862
ENSSTOG00000002692 Ictidomys tridecemlineatus ENSSTOG00000002692 I 0.862
ENSAMEG00000011453 Ailuropoda melanoleuca ENSAMEG00000011453 I 0.848
ENSAMXG00000001433 Astyanax mexicanus ENSAMXG00000001433 I 0.848
ENSAMXG00000016813 Astyanax mexicanus ENSAMXG00000016813 I 0.848
ENSAPLG00000014264 Anas platyrhynchos ENSAPLG00000014264 I 0.848
LIN28B Canis familiaris ENSCAFG00000003598 I 0.848
LIN28B Choloepus hoffmanni ENSCHOG00000001682 I 0.848
LIN28B Callithrix jacchus ENSCJAG00000001671 I 0.848
LIN28B Cavia porcellus ENSCPOG00000006178 I 0.848
LIN28B Dasypus novemcinctus ENSDNOG00000015300 I 0.848
LIN28B Equus caballus ENSECAG00000020994 I 0.848
ENSFALG00000011574 Ficedula albicollis ENSFALG00000011574 I 0.848
LIN28B Felis catus ENSFCAG00000005058 I 0.848
LIN28B Homo sapiens ENSG00000187772 D 0.848
LIN28B Gorilla gorilla ENSGGOG00000015437 I 0.848
LIN28B Loxodonta africana ENSLAFG00000017788 I 0.848
ENSMICG00000002297 Microcebus murinus ENSMICG00000002297 I 0.848
LIN28B Macaca mulatta ENSMMUG00000014470 I 0.848
LIN28B Monodelphis domestica ENSMODG00000018035 I 0.848
ENSMPUG00000009489 Mustela putorius furo ENSMPUG00000009489 I 0.848
ENSNLEG00000014146 Nomascus leucogenys ENSNLEG00000014146 I 0.848
LIN28B Ornithorhynchus anatinus ENSOANG00000010299 I 0.848
ENSOARG00000011404 Ovis aries ENSOARG00000011404 I 0.848
LIN28B Otolemur garnettii ENSOGAG00000011042 I 0.848
LIN28B Ochotona princeps ENSOPRG00000006333 I 0.848
ENSPANG00000005196 Papio anubis ENSPANG00000005196 I 0.848
ENSPPYG00000016875 Pongo abelii ENSPPYG00000016875 I 0.848
ENSPSIG00000002635 Pelodiscus sinensis ENSPSIG00000002635 I 0.848
LIN28B Pan troglodytes ENSPTRG00000018453 I 0.848
LIN28B Pteropus vampyrus ENSPVAG00000008797 I 0.848
LIN28B Sorex araneus ENSSARG00000008374 I 0.848
ENSSSCG00000004365 Sus scrofa ENSSSCG00000004365 I 0.848
LIN28B Taeniopygia guttata ENSTGUG00000012225 I 0.848
ENSTSYG00000006480 Tarsius syrichta ENSTSYG00000006480 I 0.848
LIN28B Tursiops truncatus ENSTTRG00000014919 I 0.848
Aan_R007025 Calypte anna Aan_R007025 I 0.848
Afo_R003680 Aptenodytes forsteri Afo_R003680 I 0.848
ENSBTAP00000053651-D1 Bos grunniens ENSBTAP00000053651-D1 I 0.848
ENSMMUP00000018998 Macaca fascicularis ENSMMUP00000018998 I 0.848
Gfo_R012200 Geospiza fortis Gfo_R012200 I 0.848
Pvit_09294 Pogona vitticeps Pvit_09294 I 0.848
lin28b Xenopus tropicalis XB-GENE-1218969 I 0.848
LIN28B Gallus gallus ENSGALG00000026761 I 0.846
LIN28A Erinaceus europaeus ENSEEUG00000012085 I 0.844
ENSONIG00000014706 Oreochromis niloticus ENSONIG00000014706 I 0.836
LIN28B Echinops telfairi ENSETEG00000015340 I 0.833
lin28b.S Xenopus laevis XB-GENE-1218973 I 0.833
lin28a.S Xenopus laevis XB-GENE-866059 I 0.833
lin28a Gasterosteus aculeatus ENSGACG00000007826 I 0.818
LIN28B Gasterosteus aculeatus ENSGACG00000009428 I 0.818
LIN28B Oryzias latipes ENSORLG00000012891 I 0.818
LIN28B Tetraodon nigroviridis ENSTNIG00000012302 I 0.818
LIN28B Takifugu rubripes ENSTRUG00000008428 I 0.818
ENSPFOG00000019352 Poecilia formosa ENSPFOG00000019352 I 0.815
ENSAMXG00000001888 Astyanax mexicanus ENSAMXG00000001888 I 0.803
ENSCJAG00000016916 Callithrix jacchus ENSCJAG00000016916 I 0.803
ENSCJAG00000021979 Callithrix jacchus ENSCJAG00000021979 I 0.803
lin28b Danio rerio ENSDARG00000052511 I 0.803
ENSGMOG00000010704 Gadus morhua ENSGMOG00000010704 I 0.803
lin28a Takifugu rubripes ENSTRUG00000009454 I 0.800
ENSGMOG00000015523 Gadus morhua ENSGMOG00000015523 I 0.788
ENSXMAG00000003450 Xiphophorus maculatus ENSXMAG00000003450 I 0.788
Aan_R002277 Calypte anna Aan_R002277 I 0.785
ENSSHAG00000012434 Sarcophilus harrisii ENSSHAG00000012434 I 0.774
Lin28b Mus musculus ENSMUSG00000063804 I 0.773
Lin28b Rattus norvegicus ENSRNOG00000025938 I 0.773
ENSOCUG00000011640 Oryctolagus cuniculus ENSOCUG00000011640 I 0.766
ENSLOCG00000016539 Lepisosteus oculatus ENSLOCG00000016539 I 0.758
lin28a Tetraodon nigroviridis ENSTNIG00000009802 I 0.742