lin28b.S (Xenopus laevis)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00313 (CSD) IPR002059 XB-GENE-1218973 T165581_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LIN28B
M04663_2.00 		Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX 		0.894 0.894
LIN28B
M04664_2.00 		Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX 		0.894 0.894
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAH42225 CSD 33 105

Links

Other CSD family TFs
Other Xenopus laevis TFs

133 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
lin28b Xenopus tropicalis XB-GENE-1218969 I 0.985
ENSLACG00000004053 Latimeria chalumnae ENSLACG00000004053 I 0.939
LIN28B Erinaceus europaeus ENSEEUG00000003632 I 0.924
ENSPSIG00000002635 Pelodiscus sinensis ENSPSIG00000002635 I 0.909
LIN28B Gallus gallus ENSGALG00000026761 I 0.909
ENSSSCG00000004365 Sus scrofa ENSSSCG00000004365 I 0.909
ENSOARG00000011404 Ovis aries ENSOARG00000011404 I 0.909
LIN28B Anolis carolinensis ENSACAG00000003957 I 0.909
LIN28B Monodelphis domestica ENSMODG00000018035 I 0.909
LIN28B Taeniopygia guttata ENSTGUG00000012225 I 0.909
LIN28B Equus caballus ENSECAG00000020994 I 0.909
ENSFALG00000011574 Ficedula albicollis ENSFALG00000011574 I 0.909
LIN28B Cavia porcellus ENSCPOG00000006178 I 0.909
Afo_R003680 Aptenodytes forsteri Afo_R003680 I 0.909
ENSBTAP00000053651-D1 Bos grunniens ENSBTAP00000053651-D1 I 0.909
ENSTSYG00000006480 Tarsius syrichta ENSTSYG00000006480 I 0.909
ENSAMXG00000016813 Astyanax mexicanus ENSAMXG00000016813 I 0.909
ENSAPLG00000014264 Anas platyrhynchos ENSAPLG00000014264 I 0.909
Gfo_R012200 Geospiza fortis Gfo_R012200 I 0.909
Aan_R007025 Calypte anna Aan_R007025 I 0.909
Pvit_09294 Pogona vitticeps Pvit_09294 I 0.909
LIN28B Gorilla gorilla ENSGGOG00000015437 I 0.894
LIN28B Loxodonta africana ENSLAFG00000017788 I 0.894
ENSMMUP00000018998 Macaca fascicularis ENSMMUP00000018998 I 0.894
ENSMICG00000002297 Microcebus murinus ENSMICG00000002297 I 0.894
LIN28B Macaca mulatta ENSMMUG00000014470 I 0.894
ENSMPUG00000009489 Mustela putorius furo ENSMPUG00000009489 I 0.894
Alligator_sinensis_CCG010967.1 Alligator sinensis Alligator_sinensis_CCG010967.1 I 0.894
LIN28B Pteropus vampyrus ENSPVAG00000008797 I 0.894
LIN28B Sorex araneus ENSSARG00000008374 I 0.894
LIN28B Tursiops truncatus ENSTTRG00000014919 I 0.894
ENSSTOG00000002692 Ictidomys tridecemlineatus ENSSTOG00000002692 I 0.894
LIN28B Pan troglodytes ENSPTRG00000018453 I 0.894
ENSPPYG00000016875 Pongo abelii ENSPPYG00000016875 I 0.894
LIN28B Otolemur garnettii ENSOGAG00000011042 I 0.894
LIN28B Ochotona princeps ENSOPRG00000006333 I 0.894
ENSPANG00000005196 Papio anubis ENSPANG00000005196 I 0.894
LIN28B Ornithorhynchus anatinus ENSOANG00000010299 I 0.894
ENSNLEG00000014146 Nomascus leucogenys ENSNLEG00000014146 I 0.894
LIN28B Callithrix jacchus ENSCJAG00000001671 I 0.894
LIN28B Dasypus novemcinctus ENSDNOG00000015300 I 0.894
LIN28B Echinops telfairi ENSETEG00000015340 I 0.894
LIN28B Felis catus ENSFCAG00000005058 I 0.894
LIN28B Choloepus hoffmanni ENSCHOG00000001682 I 0.894
LIN28B Canis familiaris ENSCAFG00000003598 I 0.894
ENSAMEG00000011453 Ailuropoda melanoleuca ENSAMEG00000011453 I 0.894
LIN28B Homo sapiens ENSG00000187772 D 0.894
ENSAMXG00000001433 Astyanax mexicanus ENSAMXG00000001433 I 0.879
LIN28B Gasterosteus aculeatus ENSGACG00000009428 I 0.879
ENSLOCG00000003353 Lepisosteus oculatus ENSLOCG00000003353 I 0.879
Cmyd_10009744 Chelonia mydas Cmyd_10009744 I 0.879
ENSPFOG00000014054 Poecilia formosa ENSPFOG00000014054 I 0.879
ENSLACG00000002747 Latimeria chalumnae ENSLACG00000002747 I 0.879
ENSGMOG00000010704 Gadus morhua ENSGMOG00000010704 I 0.879
LIN28B Oryzias latipes ENSORLG00000012891 I 0.864
lin28b Danio rerio ENSDARG00000052511 I 0.864
lin28a Danio rerio ENSDARG00000016999 I 0.864
ENSONIG00000016204 Oreochromis niloticus ENSONIG00000016204 I 0.864
si:ch1073-284b18.2 Takifugu rubripes ENSTRUG00000006069 I 0.864
LIN28B Tetraodon nigroviridis ENSTNIG00000012302 I 0.864
LIN28B Takifugu rubripes ENSTRUG00000008428 I 0.864
ENSLOCG00000016539 Lepisosteus oculatus ENSLOCG00000016539 I 0.864
ENSXMAG00000014593 Xiphophorus maculatus ENSXMAG00000014593 I 0.848
Aan_R005866 Calypte anna Aan_R005866 I 0.848
ENSAMXG00000001888 Astyanax mexicanus ENSAMXG00000001888 I 0.848
si:ch1073-284b18.2 Oryzias latipes ENSORLG00000014369 I 0.848
ENSAMXG00000001573 Astyanax mexicanus ENSAMXG00000001573 I 0.848
ENSGALG00000000388 Gallus gallus ENSGALG00000000388 I 0.848
ENSPFOG00000019352 Poecilia formosa ENSPFOG00000019352 I 0.848
Pvit_17184 Pogona vitticeps Pvit_17184 I 0.848
lin28a Xenopus tropicalis XB-GENE-491384 I 0.848
LIN28A Meleagris gallopavo ENSMGAG00000009456 I 0.848
ENSFALG00000000374 Ficedula albicollis ENSFALG00000000374 I 0.848
ENSP00000254231 Macaca fascicularis ENSP00000254231 I 0.833
LIN28A Callithrix jacchus ENSCJAG00000009796 I 0.833
ENSSTOG00000004329 Ictidomys tridecemlineatus ENSSTOG00000004329 I 0.833
LIN28A Sus scrofa ENSSSCG00000003557 I 0.833
LIN28A Dasypus novemcinctus ENSDNOG00000010710 I 0.833
Lin28a Rattus norvegicus ENSRNOG00000060320 I 0.833
Myotis_brandtii_Lin28a_10029661 Myotis brandtii Myotis_brandtii_Lin28a_10029661 I 0.833
ENSMEUG00000008743 Macropus eugenii ENSMEUG00000008743 I 0.833
ENSMPUG00000015724 Mustela putorius furo ENSMPUG00000015724 I 0.833
Aan_R002277 Calypte anna Aan_R002277 I 0.833
LIN28A Canis familiaris ENSCAFG00000012488 I 0.833
ENSVPAG00000008073 Vicugna pacos ENSVPAG00000008073 I 0.833
ENSXMAG00000003450 Xiphophorus maculatus ENSXMAG00000003450 I 0.833
LIN28A Tursiops truncatus ENSTTRG00000005678 I 0.833
ENSTSYG00000011513 Tarsius syrichta ENSTSYG00000011513 I 0.833
LIN28A Pteropus vampyrus ENSPVAG00000017267 I 0.833
ENSMLUG00000010158 Myotis lucifugus ENSMLUG00000010158 I 0.833
LIN28A Loxodonta africana ENSLAFG00000017525 I 0.833
LIN28A Homo sapiens ENSG00000131914 I 0.833
LIN28A Gorilla gorilla ENSGGOG00000024918 I 0.833
LIN28A Ochotona princeps ENSOPRG00000001591 I 0.833
LIN28A Equus caballus ENSECAG00000020267 I 0.833
ENSNLEG00000009294 Nomascus leucogenys ENSNLEG00000009294 I 0.833
yakG040859 Bos grunniens yakG040859 I 0.833
ENSOARG00000004614 Ovis aries ENSOARG00000004614 I 0.833
ENSOCUG00000027473 Oryctolagus cuniculus ENSOCUG00000027473 I 0.833
ENSOCUG00000027786 Oryctolagus cuniculus ENSOCUG00000027786 I 0.833
LIN28A Otolemur garnettii ENSOGAG00000003971 I 0.833
LIN28A Felis catus ENSFCAG00000012810 I 0.833
ENSBTAG00000040497 Bos taurus ENSBTAG00000040497 I 0.833
si:ch1073-284b18.2 Gasterosteus aculeatus ENSGACG00000013893 I 0.833
ENSCSAG00000000975 Chlorocebus sabaeus ENSCSAG00000000975 I 0.833
ENSOCUG00000000299 Oryctolagus cuniculus ENSOCUG00000000299 I 0.833
ENSPPYG00000001684 Pongo abelii ENSPPYG00000001684 I 0.833
Lin28a Mus musculus ENSMUSG00000050966 I 0.833
ENSPANG00000009841 Papio anubis ENSPANG00000009841 I 0.833
ENSBTAP00000004196-D2 Bos grunniens ENSBTAP00000004196-D2 I 0.833
ENSAMEG00000010582 Ailuropoda melanoleuca ENSAMEG00000010582 I 0.833
lin28a Gasterosteus aculeatus ENSGACG00000007826 I 0.818
ENSBTAG00000048256 Bos taurus ENSBTAG00000048256 I 0.818
Lin28b Rattus norvegicus ENSRNOG00000025938 I 0.818
LIN28A Danio rerio ENSDARG00000004328 I 0.818
Lin28b Mus musculus ENSMUSG00000063804 I 0.818
LIN28A Pan troglodytes ENSPTRG00000000384 I 0.818
ENSCPOG00000024027 Cavia porcellus ENSCPOG00000024027 I 0.818
lin28a.S Xenopus laevis XB-GENE-866059 I 0.818
LIN28A Monodelphis domestica ENSMODG00000014236 I 0.818
ENSCJAG00000022770 Callithrix jacchus ENSCJAG00000022770 I 0.803
ENSOARG00000003913 Ovis aries ENSOARG00000003913 I 0.803
ENSGMOG00000015660 Gadus morhua ENSGMOG00000015660 I 0.803
lin28a Takifugu rubripes ENSTRUG00000009454 I 0.773
ENSGMOG00000015523 Gadus morhua ENSGMOG00000015523 I 0.773
LIN28A Erinaceus europaeus ENSEEUG00000012085 I 0.742
LIN28B Oryctolagus cuniculus ENSOCUG00000017850 I 0.742
Myotis_brandtii_LIN28B_10034705 Myotis brandtii Myotis_brandtii_LIN28B_10034705 I 0.742
lin28a Tetraodon nigroviridis ENSTNIG00000009802 I 0.742
ENSCSAG00000014708 Chlorocebus sabaeus ENSCSAG00000014708 I 0.742
ENSCJAG00000021979 Callithrix jacchus ENSCJAG00000021979 I 0.727
ENSONIG00000014706 Oreochromis niloticus ENSONIG00000014706 I 0.712
ENSCJAG00000016916 Callithrix jacchus ENSCJAG00000016916 I 0.712