LIN28A (Erinaceus europaeus)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSEEUG00000012085 T164539_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LIN28B
M04663_2.00 		Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX 		0.797 0.797
LIN28B
M04664_2.00 		Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX 		0.797 0.797
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSEEUP00000011030 CSD 32 101

Links

Other CSD family TFs
Other Erinaceus europaeus TFs

139 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Brh_R006709 Buceros rhinoceros Brh_R006709 I 0.973
Afo_R008930 Aptenodytes forsteri Afo_R008930 I 0.973
ENSTGUG00000001037 Taeniopygia guttata ENSTGUG00000001037 I 0.973
Gfo_R011576 Geospiza fortis Gfo_R011576 I 0.973
ENSACAG00000017764 Anolis carolinensis ENSACAG00000017764 I 0.973
Ogr09706 Ophisaurus gracilis Ogr09706 I 0.946
ENSNLEG00000009294 Nomascus leucogenys ENSNLEG00000009294 I 0.891
Lin28a Mus musculus ENSMUSG00000050966 I 0.891
ENSOCUG00000000299 Oryctolagus cuniculus ENSOCUG00000000299 I 0.891
ENSOCUG00000027786 Oryctolagus cuniculus ENSOCUG00000027786 I 0.891
LIN28A Otolemur garnettii ENSOGAG00000003971 I 0.891
ENSOCUG00000027473 Oryctolagus cuniculus ENSOCUG00000027473 I 0.891
ENSMEUG00000008743 Macropus eugenii ENSMEUG00000008743 I 0.891
LIN28A Gorilla gorilla ENSGGOG00000024918 I 0.891
LIN28A Homo sapiens ENSG00000131914 I 0.891
LIN28A Loxodonta africana ENSLAFG00000017525 I 0.891
LIN28A Ochotona princeps ENSOPRG00000001591 I 0.891
ENSMLUG00000010158 Myotis lucifugus ENSMLUG00000010158 I 0.891
ENSMPUG00000015724 Mustela putorius furo ENSMPUG00000015724 I 0.891
Lin28a Rattus norvegicus ENSRNOG00000060320 I 0.891
ENSVPAG00000008073 Vicugna pacos ENSVPAG00000008073 I 0.891
LIN28A Tursiops truncatus ENSTTRG00000005678 I 0.891
ENSBTAP00000004196-D2 Bos grunniens ENSBTAP00000004196-D2 I 0.891
ENSP00000254231 Macaca fascicularis ENSP00000254231 I 0.891
Myotis_brandtii_Lin28a_10029661 Myotis brandtii Myotis_brandtii_Lin28a_10029661 I 0.891
ENSTSYG00000011513 Tarsius syrichta ENSTSYG00000011513 I 0.891
ENSSTOG00000004329 Ictidomys tridecemlineatus ENSSTOG00000004329 I 0.891
ENSPPYG00000001684 Pongo abelii ENSPPYG00000001684 I 0.891
LIN28A Pteropus vampyrus ENSPVAG00000017267 I 0.891
LIN28A Felis catus ENSFCAG00000012810 I 0.891
LIN28A Sus scrofa ENSSSCG00000003557 I 0.891
ENSPANG00000009841 Papio anubis ENSPANG00000009841 I 0.891
ENSOARG00000004614 Ovis aries ENSOARG00000004614 I 0.891
LIN28A Callithrix jacchus ENSCJAG00000009796 I 0.891
LIN28A Equus caballus ENSECAG00000020267 I 0.891
LIN28A Dasypus novemcinctus ENSDNOG00000010710 I 0.891
ENSCSAG00000000975 Chlorocebus sabaeus ENSCSAG00000000975 I 0.891
ENSBTAG00000040497 Bos taurus ENSBTAG00000040497 I 0.891
LIN28A Canis familiaris ENSCAFG00000012488 I 0.891
ENSAMEG00000010582 Ailuropoda melanoleuca ENSAMEG00000010582 I 0.891
LIN28A Meleagris gallopavo ENSMGAG00000009456 I 0.875
Aan_R005866 Calypte anna Aan_R005866 I 0.875
ENSGALG00000000388 Gallus gallus ENSGALG00000000388 I 0.875
ENSFALG00000000374 Ficedula albicollis ENSFALG00000000374 I 0.875
LIN28A Pan troglodytes ENSPTRG00000000384 I 0.875
LIN28B Oryctolagus cuniculus ENSOCUG00000017850 I 0.873
ENSCSAG00000014708 Chlorocebus sabaeus ENSCSAG00000014708 I 0.873
Myotis_brandtii_LIN28B_10034705 Myotis brandtii Myotis_brandtii_LIN28B_10034705 I 0.873
Alligator_sinensis_CCG010967.1 Alligator sinensis Alligator_sinensis_CCG010967.1 I 0.859
ENSCPOG00000024027 Cavia porcellus ENSCPOG00000024027 I 0.848
ENSLOCG00000003353 Lepisosteus oculatus ENSLOCG00000003353 I 0.844
Pvit_17184 Pogona vitticeps Pvit_17184 I 0.844
ENSPFOG00000014054 Poecilia formosa ENSPFOG00000014054 I 0.844
Cmyd_10009744 Chelonia mydas Cmyd_10009744 I 0.844
ENSXMAG00000014593 Xiphophorus maculatus ENSXMAG00000014593 I 0.844
si:ch1073-284b18.2 Gasterosteus aculeatus ENSGACG00000013893 I 0.844
yakG040859 Bos grunniens yakG040859 I 0.833
ENSCJAG00000022770 Callithrix jacchus ENSCJAG00000022770 I 0.833
LIN28A Monodelphis domestica ENSMODG00000014236 I 0.833
ENSONIG00000016204 Oreochromis niloticus ENSONIG00000016204 I 0.831
ENSOARG00000003913 Ovis aries ENSOARG00000003913 I 0.831
ENSAMXG00000001573 Astyanax mexicanus ENSAMXG00000001573 I 0.828
si:ch1073-284b18.2 Takifugu rubripes ENSTRUG00000006069 I 0.818
ENSBTAG00000048256 Bos taurus ENSBTAG00000048256 I 0.818
ENSONIG00000014706 Oreochromis niloticus ENSONIG00000014706 I 0.818
ENSCJAG00000021979 Callithrix jacchus ENSCJAG00000021979 I 0.812
ENSLACG00000004053 Latimeria chalumnae ENSLACG00000004053 I 0.812
LIN28B Erinaceus europaeus ENSEEUG00000003632 I 0.812
si:ch1073-284b18.2 Oryzias latipes ENSORLG00000014369 I 0.803
ENSLACG00000002747 Latimeria chalumnae ENSLACG00000002747 I 0.803
ENSGMOG00000015660 Gadus morhua ENSGMOG00000015660 I 0.800
LIN28A Danio rerio ENSDARG00000004328 I 0.800
LIN28B Felis catus ENSFCAG00000005058 I 0.797
ENSSSCG00000004365 Sus scrofa ENSSSCG00000004365 I 0.797
LIN28B Choloepus hoffmanni ENSCHOG00000001682 I 0.797
ENSBTAP00000053651-D1 Bos grunniens ENSBTAP00000053651-D1 I 0.797
LIN28B Callithrix jacchus ENSCJAG00000001671 I 0.797
LIN28B Pan troglodytes ENSPTRG00000018453 I 0.797
LIN28B Pteropus vampyrus ENSPVAG00000008797 I 0.797
ENSNLEG00000014146 Nomascus leucogenys ENSNLEG00000014146 I 0.797
Pvit_09294 Pogona vitticeps Pvit_09294 I 0.797
LIN28B Gorilla gorilla ENSGGOG00000015437 I 0.797
LIN28B Homo sapiens ENSG00000187772 D 0.797
ENSMMUP00000018998 Macaca fascicularis ENSMMUP00000018998 I 0.797
ENSAMEG00000011453 Ailuropoda melanoleuca ENSAMEG00000011453 I 0.797
LIN28B Equus caballus ENSECAG00000020994 I 0.797
ENSTSYG00000006480 Tarsius syrichta ENSTSYG00000006480 I 0.797
LIN28B Canis familiaris ENSCAFG00000003598 I 0.797
LIN28B Tursiops truncatus ENSTTRG00000014919 I 0.797
LIN28B Anolis carolinensis ENSACAG00000003957 I 0.797
LIN28B Sorex araneus ENSSARG00000008374 I 0.797
LIN28B Ochotona princeps ENSOPRG00000006333 I 0.797
ENSMPUG00000009489 Mustela putorius furo ENSMPUG00000009489 I 0.797
LIN28B Otolemur garnettii ENSOGAG00000011042 I 0.797
ENSMICG00000002297 Microcebus murinus ENSMICG00000002297 I 0.797
LIN28B Macaca mulatta ENSMMUG00000014470 I 0.797
ENSPSIG00000002635 Pelodiscus sinensis ENSPSIG00000002635 I 0.797
LIN28B Monodelphis domestica ENSMODG00000018035 I 0.797
ENSOARG00000011404 Ovis aries ENSOARG00000011404 I 0.797
ENSPANG00000005196 Papio anubis ENSPANG00000005196 I 0.797
LIN28B Loxodonta africana ENSLAFG00000017788 I 0.797
LIN28B Dasypus novemcinctus ENSDNOG00000015300 I 0.797
ENSPPYG00000016875 Pongo abelii ENSPPYG00000016875 I 0.797
lin28a Danio rerio ENSDARG00000016999 I 0.788
ENSAMXG00000001433 Astyanax mexicanus ENSAMXG00000001433 I 0.788
LIN28B Gallus gallus ENSGALG00000026761 I 0.781
ENSSTOG00000002692 Ictidomys tridecemlineatus ENSSTOG00000002692 I 0.781
lin28a Xenopus tropicalis XB-GENE-491384 I 0.773
Gfo_R012200 Geospiza fortis Gfo_R012200 I 0.773
ENSAPLG00000014264 Anas platyrhynchos ENSAPLG00000014264 I 0.773
ENSAMXG00000016813 Astyanax mexicanus ENSAMXG00000016813 I 0.773
Afo_R003680 Aptenodytes forsteri Afo_R003680 I 0.773
Aan_R007025 Calypte anna Aan_R007025 I 0.773
LIN28B Echinops telfairi ENSETEG00000015340 I 0.773
ENSFALG00000011574 Ficedula albicollis ENSFALG00000011574 I 0.773
LIN28B Taeniopygia guttata ENSTGUG00000012225 I 0.773
LIN28B Ornithorhynchus anatinus ENSOANG00000010299 I 0.773
lin28a.S Xenopus laevis XB-GENE-866059 I 0.766
LIN28B Cavia porcellus ENSCPOG00000006178 I 0.758
lin28b Xenopus tropicalis XB-GENE-1218969 I 0.758
ENSGMOG00000015523 Gadus morhua ENSGMOG00000015523 I 0.750
Lin28b Mus musculus ENSMUSG00000063804 I 0.750
Lin28b Rattus norvegicus ENSRNOG00000025938 I 0.750
lin28b.S Xenopus laevis XB-GENE-1218973 I 0.742
LIN28B Tetraodon nigroviridis ENSTNIG00000012302 I 0.742
lin28a Gasterosteus aculeatus ENSGACG00000007826 I 0.742
ENSPFOG00000019352 Poecilia formosa ENSPFOG00000019352 I 0.734
lin28b Danio rerio ENSDARG00000052511 I 0.734
ENSAMXG00000001888 Astyanax mexicanus ENSAMXG00000001888 I 0.734
lin28a Takifugu rubripes ENSTRUG00000009454 I 0.734
ENSXMAG00000003450 Xiphophorus maculatus ENSXMAG00000003450 I 0.734
LIN28B Gasterosteus aculeatus ENSGACG00000009428 I 0.727
LIN28B Oryzias latipes ENSORLG00000012891 I 0.727
ENSCJAG00000016916 Callithrix jacchus ENSCJAG00000016916 I 0.727
LIN28B Takifugu rubripes ENSTRUG00000008428 I 0.727
Aan_R002277 Calypte anna Aan_R002277 I 0.719
ENSGMOG00000010704 Gadus morhua ENSGMOG00000010704 I 0.712
ENSOCUG00000011640 Oryctolagus cuniculus ENSOCUG00000011640 I 0.703
LIN28A Choloepus hoffmanni ENSCHOG00000002073 I 0.700