CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Lin28b
(
Mus musculus
)
CSD
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00313 (CSD)
IPR002059
ENSMUSG00000063804
T164656_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Predicted to enable RNA binding activity and sequence-specific double-stranded DNA binding activity. Predicted to be involved in RNA metabolic process and regulation of RNA metabolic process. Predicted to act upstream of or within gene silencing by RNA. Predicted to be located in cytosol; nucleolus; and nucleoplasm. Is expressed in several structures, including alimentary system; blastocyst; brain; genitourinary system; and lumbar dorsal root ganglion. Used to study neuroblastoma. Orthologous to human LIN28B (lin-28 homolog B). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LIN28B
M04663_2.00
Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG
SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX
0.894
0.894
LIN28B
M04664_2.00
Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG
SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX
0.894
0.894
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000078361
CSD
28
100
GTGHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKSPKGLESIRVTGP
Links
Other
CSD
family TFs
Other
Mus musculus
TFs
144 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Lin28b
Rattus norvegicus
ENSRNOG00000025938
I
1.000
LIN28B
Myotis lucifugus
ENSMLUG00000006883
I
0.973
LIN28B
Bos taurus
ENSBTAG00000043973
I
0.973
ENSTGUG00000001037
Taeniopygia guttata
ENSTGUG00000001037
I
0.919
ENSACAG00000017764
Anolis carolinensis
ENSACAG00000017764
I
0.919
Afo_R008930
Aptenodytes forsteri
Afo_R008930
I
0.919
Brh_R006709
Buceros rhinoceros
Brh_R006709
I
0.919
Gfo_R011576
Geospiza fortis
Gfo_R011576
I
0.919
ENSMPUG00000009489
Mustela putorius furo
ENSMPUG00000009489
I
0.894
LIN28B
Anolis carolinensis
ENSACAG00000003957
I
0.894
ENSOARG00000011404
Ovis aries
ENSOARG00000011404
I
0.894
ENSNLEG00000014146
Nomascus leucogenys
ENSNLEG00000014146
I
0.894
LIN28B
Gorilla gorilla
ENSGGOG00000015437
I
0.894
LIN28B
Echinops telfairi
ENSETEG00000015340
I
0.894
LIN28B
Felis catus
ENSFCAG00000005058
I
0.894
LIN28B
Homo sapiens
ENSG00000187772
D
0.894
LIN28B
Loxodonta africana
ENSLAFG00000017788
I
0.894
ENSMICG00000002297
Microcebus murinus
ENSMICG00000002297
I
0.894
ENSMMUP00000018998
Macaca fascicularis
ENSMMUP00000018998
I
0.894
ENSBTAP00000053651-D1
Bos grunniens
ENSBTAP00000053651-D1
I
0.894
LIN28B
Sorex araneus
ENSSARG00000008374
I
0.894
ENSSSCG00000004365
Sus scrofa
ENSSSCG00000004365
I
0.894
ENSTSYG00000006480
Tarsius syrichta
ENSTSYG00000006480
I
0.894
LIN28B
Tursiops truncatus
ENSTTRG00000014919
I
0.894
LIN28B
Pteropus vampyrus
ENSPVAG00000008797
I
0.894
LIN28B
Pan troglodytes
ENSPTRG00000018453
I
0.894
LIN28B
Ochotona princeps
ENSOPRG00000006333
I
0.894
ENSPANG00000005196
Papio anubis
ENSPANG00000005196
I
0.894
LIN28B
Erinaceus europaeus
ENSEEUG00000003632
I
0.894
ENSPPYG00000016875
Pongo abelii
ENSPPYG00000016875
I
0.894
LIN28B
Otolemur garnettii
ENSOGAG00000011042
I
0.894
LIN28B
Macaca mulatta
ENSMMUG00000014470
I
0.894
ENSAMEG00000011453
Ailuropoda melanoleuca
ENSAMEG00000011453
I
0.894
LIN28B
Canis familiaris
ENSCAFG00000003598
I
0.894
LIN28B
Dasypus novemcinctus
ENSDNOG00000015300
I
0.894
LIN28B
Choloepus hoffmanni
ENSCHOG00000001682
I
0.894
LIN28B
Callithrix jacchus
ENSCJAG00000001671
I
0.894
LIN28B
Equus caballus
ENSECAG00000020994
I
0.894
Ogr09706
Ophisaurus gracilis
Ogr09706
I
0.892
ENSSTOG00000002692
Ictidomys tridecemlineatus
ENSSTOG00000002692
I
0.879
Gfo_R012200
Geospiza fortis
Gfo_R012200
I
0.879
LIN28B
Taeniopygia guttata
ENSTGUG00000012225
I
0.879
LIN28B
Monodelphis domestica
ENSMODG00000018035
I
0.879
ENSPSIG00000002635
Pelodiscus sinensis
ENSPSIG00000002635
I
0.879
LIN28B
Cavia porcellus
ENSCPOG00000006178
I
0.879
Pvit_09294
Pogona vitticeps
Pvit_09294
I
0.879
ENSAPLG00000014264
Anas platyrhynchos
ENSAPLG00000014264
I
0.879
Aan_R007025
Calypte anna
Aan_R007025
I
0.879
ENSFALG00000011574
Ficedula albicollis
ENSFALG00000011574
I
0.879
Afo_R003680
Aptenodytes forsteri
Afo_R003680
I
0.879
LIN28B
Oryctolagus cuniculus
ENSOCUG00000017850
I
0.873
ENSCSAG00000014708
Chlorocebus sabaeus
ENSCSAG00000014708
I
0.873
Myotis_brandtii_LIN28B_10034705
Myotis brandtii
Myotis_brandtii_LIN28B_10034705
I
0.873
LIN28B
Ornithorhynchus anatinus
ENSOANG00000010299
I
0.864
ENSLOCG00000016539
Lepisosteus oculatus
ENSLOCG00000016539
I
0.864
ENSLACG00000004053
Latimeria chalumnae
ENSLACG00000004053
I
0.864
LIN28A
Monodelphis domestica
ENSMODG00000014236
I
0.848
LIN28B
Gallus gallus
ENSGALG00000026761
I
0.848
lin28b
Xenopus tropicalis
XB-GENE-1218969
I
0.833
ENSPPYG00000001684
Pongo abelii
ENSPPYG00000001684
I
0.818
lin28b.S
Xenopus laevis
XB-GENE-1218973
I
0.818
ENSP00000254231
Macaca fascicularis
ENSP00000254231
I
0.818
LIN28A
Callithrix jacchus
ENSCJAG00000009796
I
0.818
LIN28A
Ochotona princeps
ENSOPRG00000001591
I
0.818
ENSPANG00000009841
Papio anubis
ENSPANG00000009841
I
0.818
ENSAMEG00000010582
Ailuropoda melanoleuca
ENSAMEG00000010582
I
0.818
LIN28A
Canis familiaris
ENSCAFG00000012488
I
0.818
LIN28A
Tursiops truncatus
ENSTTRG00000005678
I
0.818
LIN28A
Sus scrofa
ENSSSCG00000003557
I
0.818
ENSSTOG00000004329
Ictidomys tridecemlineatus
ENSSTOG00000004329
I
0.818
ENSTSYG00000011513
Tarsius syrichta
ENSTSYG00000011513
I
0.818
ENSBTAP00000004196-D2
Bos grunniens
ENSBTAP00000004196-D2
I
0.818
ENSBTAG00000040497
Bos taurus
ENSBTAG00000040497
I
0.818
Lin28a
Rattus norvegicus
ENSRNOG00000060320
I
0.818
LIN28A
Pan troglodytes
ENSPTRG00000000384
I
0.818
Cmyd_10009744
Chelonia mydas
Cmyd_10009744
I
0.818
ENSVPAG00000008073
Vicugna pacos
ENSVPAG00000008073
I
0.818
LIN28A
Pteropus vampyrus
ENSPVAG00000017267
I
0.818
Aan_R005866
Calypte anna
Aan_R005866
I
0.818
ENSOCUG00000027786
Oryctolagus cuniculus
ENSOCUG00000027786
I
0.818
ENSMLUG00000010158
Myotis lucifugus
ENSMLUG00000010158
I
0.818
Myotis_brandtii_Lin28a_10029661
Myotis brandtii
Myotis_brandtii_Lin28a_10029661
I
0.818
Alligator_sinensis_CCG010967.1
Alligator sinensis
Alligator_sinensis_CCG010967.1
I
0.818
ENSCSAG00000000975
Chlorocebus sabaeus
ENSCSAG00000000975
I
0.818
ENSMPUG00000015724
Mustela putorius furo
ENSMPUG00000015724
I
0.818
ENSGALG00000000388
Gallus gallus
ENSGALG00000000388
I
0.818
LIN28A
Meleagris gallopavo
ENSMGAG00000009456
I
0.818
LIN28A
Loxodonta africana
ENSLAFG00000017525
I
0.818
LIN28A
Otolemur garnettii
ENSOGAG00000003971
I
0.818
LIN28A
Gorilla gorilla
ENSGGOG00000024918
I
0.818
ENSMEUG00000008743
Macropus eugenii
ENSMEUG00000008743
I
0.818
ENSGMOG00000015523
Gadus morhua
ENSGMOG00000015523
I
0.818
Lin28a
Mus musculus
ENSMUSG00000050966
I
0.818
ENSOCUG00000000299
Oryctolagus cuniculus
ENSOCUG00000000299
I
0.818
ENSFALG00000000374
Ficedula albicollis
ENSFALG00000000374
I
0.818
LIN28A
Equus caballus
ENSECAG00000020267
I
0.818
ENSOCUG00000027473
Oryctolagus cuniculus
ENSOCUG00000027473
I
0.818
ENSNLEG00000009294
Nomascus leucogenys
ENSNLEG00000009294
I
0.818
LIN28A
Felis catus
ENSFCAG00000012810
I
0.818
LIN28A
Homo sapiens
ENSG00000131914
I
0.818
ENSOARG00000004614
Ovis aries
ENSOARG00000004614
I
0.818
LIN28A
Dasypus novemcinctus
ENSDNOG00000010710
I
0.818
LIN28B
Tetraodon nigroviridis
ENSTNIG00000012302
I
0.803
ENSAMXG00000001433
Astyanax mexicanus
ENSAMXG00000001433
I
0.803
si:ch1073-284b18.2
Takifugu rubripes
ENSTRUG00000006069
I
0.803
Aan_R002277
Calypte anna
Aan_R002277
I
0.803
Pvit_17184
Pogona vitticeps
Pvit_17184
I
0.803
ENSLOCG00000003353
Lepisosteus oculatus
ENSLOCG00000003353
I
0.803
si:ch1073-284b18.2
Oryzias latipes
ENSORLG00000014369
I
0.803
yakG040859
Bos grunniens
yakG040859
I
0.803
ENSCPOG00000024027
Cavia porcellus
ENSCPOG00000024027
I
0.803
lin28a
Xenopus tropicalis
XB-GENE-491384
I
0.803
ENSLACG00000002747
Latimeria chalumnae
ENSLACG00000002747
I
0.803
ENSPFOG00000014054
Poecilia formosa
ENSPFOG00000014054
I
0.803
ENSONIG00000016204
Oreochromis niloticus
ENSONIG00000016204
I
0.800
LIN28A
Danio rerio
ENSDARG00000004328
I
0.800
ENSGMOG00000015660
Gadus morhua
ENSGMOG00000015660
I
0.800
LIN28B
Oryzias latipes
ENSORLG00000012891
I
0.788
LIN28B
Takifugu rubripes
ENSTRUG00000008428
I
0.788
ENSAMXG00000016813
Astyanax mexicanus
ENSAMXG00000016813
I
0.788
ENSAMXG00000001573
Astyanax mexicanus
ENSAMXG00000001573
I
0.788
ENSCJAG00000022770
Callithrix jacchus
ENSCJAG00000022770
I
0.788
LIN28B
Gasterosteus aculeatus
ENSGACG00000009428
I
0.788
ENSBTAG00000048256
Bos taurus
ENSBTAG00000048256
I
0.788
ENSXMAG00000014593
Xiphophorus maculatus
ENSXMAG00000014593
I
0.788
ENSOARG00000003913
Ovis aries
ENSOARG00000003913
I
0.785
ENSONIG00000014706
Oreochromis niloticus
ENSONIG00000014706
I
0.782
ENSSHAG00000012434
Sarcophilus harrisii
ENSSHAG00000012434
I
0.774
lin28b
Danio rerio
ENSDARG00000052511
I
0.773
lin28a.S
Xenopus laevis
XB-GENE-866059
I
0.773
lin28a
Danio rerio
ENSDARG00000016999
I
0.773
ENSXMAG00000003450
Xiphophorus maculatus
ENSXMAG00000003450
I
0.773
ENSAMXG00000001888
Astyanax mexicanus
ENSAMXG00000001888
I
0.773
si:ch1073-284b18.2
Gasterosteus aculeatus
ENSGACG00000013893
I
0.773
ENSGMOG00000010704
Gadus morhua
ENSGMOG00000010704
I
0.773
ENSPFOG00000019352
Poecilia formosa
ENSPFOG00000019352
I
0.773
LIN28A
Erinaceus europaeus
ENSEEUG00000012085
I
0.750
ENSOCUG00000011640
Oryctolagus cuniculus
ENSOCUG00000011640
I
0.750
lin28a
Takifugu rubripes
ENSTRUG00000009454
I
0.742
lin28a
Gasterosteus aculeatus
ENSGACG00000007826
I
0.742
lin28a
Tetraodon nigroviridis
ENSTNIG00000009802
I
0.727
ENSCJAG00000016916
Callithrix jacchus
ENSCJAG00000016916
I
0.727
ENSCJAG00000021979
Callithrix jacchus
ENSCJAG00000021979
I
0.712
LIN28A
Choloepus hoffmanni
ENSCHOG00000002073
I
0.700