LIN28A (Sus scrofa)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSSSCG00000003557 T164788_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LIN28B
M04663_2.00 		Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX 		0.864 0.864
LIN28B
M04664_2.00 		Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX 		0.864 0.864
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000003860 CSD 36 108

Links

Other CSD family TFs
Other Sus scrofa TFs

152 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000010582 Ailuropoda melanoleuca ENSAMEG00000010582 I 1.000
ENSBTAG00000040497 Bos taurus ENSBTAG00000040497 I 1.000
LIN28A Canis familiaris ENSCAFG00000012488 I 1.000
LIN28A Choloepus hoffmanni ENSCHOG00000002073 I 1.000
LIN28A Callithrix jacchus ENSCJAG00000009796 I 1.000
ENSCSAG00000000975 Chlorocebus sabaeus ENSCSAG00000000975 I 1.000
LIN28A Dasypus novemcinctus ENSDNOG00000010710 I 1.000
LIN28A Equus caballus ENSECAG00000020267 I 1.000
LIN28A Felis catus ENSFCAG00000012810 I 1.000
LIN28A Homo sapiens ENSG00000131914 I 1.000
LIN28A Gorilla gorilla ENSGGOG00000024918 I 1.000
LIN28A Loxodonta africana ENSLAFG00000017525 I 1.000
ENSMEUG00000008743 Macropus eugenii ENSMEUG00000008743 I 1.000
ENSMLUG00000010158 Myotis lucifugus ENSMLUG00000010158 I 1.000
ENSMPUG00000015724 Mustela putorius furo ENSMPUG00000015724 I 1.000
Lin28a Mus musculus ENSMUSG00000050966 I 1.000
ENSNLEG00000009294 Nomascus leucogenys ENSNLEG00000009294 I 1.000
ENSOARG00000004614 Ovis aries ENSOARG00000004614 I 1.000
ENSOCUG00000000299 Oryctolagus cuniculus ENSOCUG00000000299 I 1.000
ENSOCUG00000027473 Oryctolagus cuniculus ENSOCUG00000027473 I 1.000
ENSOCUG00000027786 Oryctolagus cuniculus ENSOCUG00000027786 I 1.000
LIN28A Otolemur garnettii ENSOGAG00000003971 I 1.000
LIN28A Ochotona princeps ENSOPRG00000001591 I 1.000
ENSPANG00000009841 Papio anubis ENSPANG00000009841 I 1.000
ENSPPYG00000001684 Pongo abelii ENSPPYG00000001684 I 1.000
LIN28A Pteropus vampyrus ENSPVAG00000017267 I 1.000
Lin28a Rattus norvegicus ENSRNOG00000060320 I 1.000
ENSSTOG00000004329 Ictidomys tridecemlineatus ENSSTOG00000004329 I 1.000
ENSTSYG00000011513 Tarsius syrichta ENSTSYG00000011513 I 1.000
LIN28A Tursiops truncatus ENSTTRG00000005678 I 1.000
ENSVPAG00000008073 Vicugna pacos ENSVPAG00000008073 I 1.000
ENSBTAP00000004196-D2 Bos grunniens ENSBTAP00000004196-D2 I 1.000
ENSP00000254231 Macaca fascicularis ENSP00000254231 I 1.000
Myotis_brandtii_Lin28a_10029661 Myotis brandtii Myotis_brandtii_Lin28a_10029661 I 1.000
ENSCPOG00000024027 Cavia porcellus ENSCPOG00000024027 I 0.985
LIN28A Pan troglodytes ENSPTRG00000000384 I 0.985
ENSMMUG00000032211 Macaca mulatta ENSMMUG00000032211 I 0.974
ENSACAG00000017764 Anolis carolinensis ENSACAG00000017764 I 0.973
ENSTGUG00000001037 Taeniopygia guttata ENSTGUG00000001037 I 0.973
Afo_R008930 Aptenodytes forsteri Afo_R008930 I 0.973
Brh_R006709 Buceros rhinoceros Brh_R006709 I 0.973
Gfo_R011576 Geospiza fortis Gfo_R011576 I 0.973
ENSPSIG00000018001 Pelodiscus sinensis ENSPSIG00000018001 I 0.972
ENSCJAG00000022770 Callithrix jacchus ENSCJAG00000022770 I 0.970
yakG040859 Bos grunniens yakG040859 I 0.970
ENSBTAG00000048256 Bos taurus ENSBTAG00000048256 I 0.955
LIN28A Monodelphis domestica ENSMODG00000014236 I 0.955
Tal_R007754 Tyto alba Tal_R007754 I 0.947
Ogr09706 Ophisaurus gracilis Ogr09706 I 0.946
yakA12818 Bos grunniens yakA12818 I 0.946
ENSFALG00000000374 Ficedula albicollis ENSFALG00000000374 I 0.939
ENSGALG00000000388 Gallus gallus ENSGALG00000000388 I 0.939
LIN28A Meleagris gallopavo ENSMGAG00000009456 I 0.939
Aan_R005866 Calypte anna Aan_R005866 I 0.939
Alligator_sinensis_CCG010967.1 Alligator sinensis Alligator_sinensis_CCG010967.1 I 0.939
ENSOARG00000003913 Ovis aries ENSOARG00000003913 I 0.938
Ogr14286 Ophisaurus gracilis Ogr14286 I 0.938
Cmyd_10009744 Chelonia mydas Cmyd_10009744 I 0.924
si:ch1073-284b18.2 Gasterosteus aculeatus ENSGACG00000013893 I 0.923
Pvit_17184 Pogona vitticeps Pvit_17184 I 0.923
LIN28B Bos taurus ENSBTAG00000043973 I 0.919
LIN28B Myotis lucifugus ENSMLUG00000006883 I 0.919
ENSSHAG00000012716 Sarcophilus harrisii ENSSHAG00000012716 I 0.919
Cmyd_10021069 Chelonia mydas Cmyd_10021069 I 0.919
ENSLOCG00000003353 Lepisosteus oculatus ENSLOCG00000003353 I 0.909
ENSPFOG00000014054 Poecilia formosa ENSPFOG00000014054 I 0.909
si:ch1073-284b18.2 Takifugu rubripes ENSTRUG00000006069 I 0.909
ENSONIG00000016204 Oreochromis niloticus ENSONIG00000016204 I 0.908
ENSXMAG00000014593 Xiphophorus maculatus ENSXMAG00000014593 I 0.908
lin28a Danio rerio ENSDARG00000016999 I 0.895
ENSLACG00000002747 Latimeria chalumnae ENSLACG00000002747 I 0.894
ENSLACG00000004053 Latimeria chalumnae ENSLACG00000004053 I 0.894
si:ch1073-284b18.2 Oryzias latipes ENSORLG00000014369 I 0.894
ENSAMXG00000001573 Astyanax mexicanus ENSAMXG00000001573 I 0.892
ENSGMOG00000015660 Gadus morhua ENSGMOG00000015660 I 0.892
LIN28B Meleagris gallopavo ENSMGAG00000013531 I 0.892
LIN28A Erinaceus europaeus ENSEEUG00000012085 I 0.891
ENSCJAG00000021979 Callithrix jacchus ENSCJAG00000021979 I 0.879
LIN28B Erinaceus europaeus ENSEEUG00000003632 I 0.879
LIN28A Danio rerio ENSDARG00000004328 I 0.877
ENSCSAG00000014708 Chlorocebus sabaeus ENSCSAG00000014708 I 0.873
LIN28B Oryctolagus cuniculus ENSOCUG00000017850 I 0.873
Myotis_brandtii_LIN28B_10034705 Myotis brandtii Myotis_brandtii_LIN28B_10034705 I 0.873
LIN28B Anolis carolinensis ENSACAG00000003957 I 0.864
ENSAMEG00000011453 Ailuropoda melanoleuca ENSAMEG00000011453 I 0.864
ENSAMXG00000001433 Astyanax mexicanus ENSAMXG00000001433 I 0.864
ENSAMXG00000016813 Astyanax mexicanus ENSAMXG00000016813 I 0.864
ENSAPLG00000014264 Anas platyrhynchos ENSAPLG00000014264 I 0.864
LIN28B Canis familiaris ENSCAFG00000003598 I 0.864
LIN28B Choloepus hoffmanni ENSCHOG00000001682 I 0.864
LIN28B Callithrix jacchus ENSCJAG00000001671 I 0.864
ENSCJAG00000016916 Callithrix jacchus ENSCJAG00000016916 I 0.864
LIN28B Dasypus novemcinctus ENSDNOG00000015300 I 0.864
LIN28B Equus caballus ENSECAG00000020994 I 0.864
LIN28B Echinops telfairi ENSETEG00000015340 I 0.864
ENSFALG00000011574 Ficedula albicollis ENSFALG00000011574 I 0.864
LIN28B Felis catus ENSFCAG00000005058 I 0.864
LIN28B Homo sapiens ENSG00000187772 D 0.864
LIN28B Gallus gallus ENSGALG00000026761 I 0.864
LIN28B Gorilla gorilla ENSGGOG00000015437 I 0.864
LIN28B Loxodonta africana ENSLAFG00000017788 I 0.864
ENSMICG00000002297 Microcebus murinus ENSMICG00000002297 I 0.864
LIN28B Macaca mulatta ENSMMUG00000014470 I 0.864
LIN28B Monodelphis domestica ENSMODG00000018035 I 0.864
ENSMPUG00000009489 Mustela putorius furo ENSMPUG00000009489 I 0.864
ENSNLEG00000014146 Nomascus leucogenys ENSNLEG00000014146 I 0.864
LIN28B Ornithorhynchus anatinus ENSOANG00000010299 I 0.864
ENSOARG00000011404 Ovis aries ENSOARG00000011404 I 0.864
LIN28B Otolemur garnettii ENSOGAG00000011042 I 0.864
LIN28B Ochotona princeps ENSOPRG00000006333 I 0.864
ENSPANG00000005196 Papio anubis ENSPANG00000005196 I 0.864
ENSPPYG00000016875 Pongo abelii ENSPPYG00000016875 I 0.864
ENSPSIG00000002635 Pelodiscus sinensis ENSPSIG00000002635 I 0.864
LIN28B Pan troglodytes ENSPTRG00000018453 I 0.864
LIN28B Pteropus vampyrus ENSPVAG00000008797 I 0.864
LIN28B Sorex araneus ENSSARG00000008374 I 0.864
ENSSSCG00000004365 Sus scrofa ENSSSCG00000004365 I 0.864
LIN28B Taeniopygia guttata ENSTGUG00000012225 I 0.864
ENSTSYG00000006480 Tarsius syrichta ENSTSYG00000006480 I 0.864
LIN28B Tursiops truncatus ENSTTRG00000014919 I 0.864
Aan_R007025 Calypte anna Aan_R007025 I 0.864
Afo_R003680 Aptenodytes forsteri Afo_R003680 I 0.864
ENSBTAP00000053651-D1 Bos grunniens ENSBTAP00000053651-D1 I 0.864
ENSMMUP00000018998 Macaca fascicularis ENSMMUP00000018998 I 0.864
Gfo_R012200 Geospiza fortis Gfo_R012200 I 0.864
Pvit_09294 Pogona vitticeps Pvit_09294 I 0.864
lin28a Xenopus tropicalis XB-GENE-491384 I 0.864
LIN28B Cavia porcellus ENSCPOG00000006178 I 0.848
ENSSTOG00000002692 Ictidomys tridecemlineatus ENSSTOG00000002692 I 0.848
lin28b Xenopus tropicalis XB-GENE-1218969 I 0.848
lin28a Gasterosteus aculeatus ENSGACG00000007826 I 0.833
LIN28B Tetraodon nigroviridis ENSTNIG00000012302 I 0.833
lin28b.S Xenopus laevis XB-GENE-1218973 I 0.833
lin28a.S Xenopus laevis XB-GENE-866059 I 0.833
ENSOCUG00000011640 Oryctolagus cuniculus ENSOCUG00000011640 I 0.828
LIN28B Gasterosteus aculeatus ENSGACG00000009428 I 0.818
ENSGMOG00000010704 Gadus morhua ENSGMOG00000010704 I 0.818
Lin28b Mus musculus ENSMUSG00000063804 I 0.818
ENSONIG00000014706 Oreochromis niloticus ENSONIG00000014706 I 0.818
LIN28B Oryzias latipes ENSORLG00000012891 I 0.818
Lin28b Rattus norvegicus ENSRNOG00000025938 I 0.818
LIN28B Takifugu rubripes ENSTRUG00000008428 I 0.818
ENSXMAG00000003450 Xiphophorus maculatus ENSXMAG00000003450 I 0.818
ENSAMXG00000001888 Astyanax mexicanus ENSAMXG00000001888 I 0.803
lin28b Danio rerio ENSDARG00000052511 I 0.803
ENSGMOG00000015523 Gadus morhua ENSGMOG00000015523 I 0.803
ENSPFOG00000019352 Poecilia formosa ENSPFOG00000019352 I 0.803
lin28a Takifugu rubripes ENSTRUG00000009454 I 0.803
Aan_R002277 Calypte anna Aan_R002277 I 0.788
ENSSHAG00000012434 Sarcophilus harrisii ENSSHAG00000012434 I 0.774
ENSLOCG00000016539 Lepisosteus oculatus ENSLOCG00000016539 I 0.773
lin28a Tetraodon nigroviridis ENSTNIG00000009802 I 0.758