Cmyd_10021069 (Chelonia mydas)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00313 (CSD) IPR002059 Cmyd_10021069 T165303_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LIN28B
M04663_2.00 		Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX 		0.973 0.973
LIN28B
M04664_2.00 		Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX 		0.973 0.973
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10021069 CSD 1 37

Links

Other CSD family TFs
Other Chelonia mydas TFs

52 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LIN28B Anolis carolinensis ENSACAG00000003957 I 1.000
ENSLACG00000004053 Latimeria chalumnae ENSLACG00000004053 I 1.000
ENSSHAG00000012716 Sarcophilus harrisii ENSSHAG00000012716 I 1.000
Ogr14286 Ophisaurus gracilis Ogr14286 I 1.000
LIN28B Bos taurus ENSBTAG00000043973 I 0.973
LIN28B Meleagris gallopavo ENSMGAG00000013531 I 0.973
LIN28B Myotis lucifugus ENSMLUG00000006883 I 0.973
ENSACAG00000017764 Anolis carolinensis ENSACAG00000017764 I 0.946
ENSTGUG00000001037 Taeniopygia guttata ENSTGUG00000001037 I 0.946
Afo_R008930 Aptenodytes forsteri Afo_R008930 I 0.946
Brh_R006709 Buceros rhinoceros Brh_R006709 I 0.946
Gfo_R011576 Geospiza fortis Gfo_R011576 I 0.946
Tal_R007754 Tyto alba Tal_R007754 I 0.946
Lin28a Mus musculus ENSMUSG00000050966 I 0.938
ENSAMEG00000010582 Ailuropoda melanoleuca ENSAMEG00000010582 I 0.919
ENSBTAG00000040497 Bos taurus ENSBTAG00000040497 I 0.919
LIN28A Canis familiaris ENSCAFG00000012488 I 0.919
LIN28A Callithrix jacchus ENSCJAG00000009796 I 0.919
ENSCSAG00000000975 Chlorocebus sabaeus ENSCSAG00000000975 I 0.919
LIN28A Dasypus novemcinctus ENSDNOG00000010710 I 0.919
LIN28A Equus caballus ENSECAG00000020267 I 0.919
LIN28A Felis catus ENSFCAG00000012810 I 0.919
LIN28A Homo sapiens ENSG00000131914 I 0.919
LIN28A Gorilla gorilla ENSGGOG00000024918 I 0.919
LIN28A Loxodonta africana ENSLAFG00000017525 I 0.919
ENSMEUG00000008743 Macropus eugenii ENSMEUG00000008743 I 0.919
ENSMLUG00000010158 Myotis lucifugus ENSMLUG00000010158 I 0.919
ENSMPUG00000015724 Mustela putorius furo ENSMPUG00000015724 I 0.919
ENSNLEG00000009294 Nomascus leucogenys ENSNLEG00000009294 I 0.919
ENSOARG00000004614 Ovis aries ENSOARG00000004614 I 0.919
ENSOCUG00000000299 Oryctolagus cuniculus ENSOCUG00000000299 I 0.919
ENSOCUG00000027473 Oryctolagus cuniculus ENSOCUG00000027473 I 0.919
ENSOCUG00000027786 Oryctolagus cuniculus ENSOCUG00000027786 I 0.919
LIN28A Otolemur garnettii ENSOGAG00000003971 I 0.919
LIN28A Ochotona princeps ENSOPRG00000001591 I 0.919
ENSPANG00000009841 Papio anubis ENSPANG00000009841 I 0.919
ENSPPYG00000001684 Pongo abelii ENSPPYG00000001684 I 0.919
ENSPSIG00000018001 Pelodiscus sinensis ENSPSIG00000018001 I 0.919
LIN28A Pteropus vampyrus ENSPVAG00000017267 I 0.919
Lin28a Rattus norvegicus ENSRNOG00000060320 I 0.919
LIN28A Sus scrofa ENSSSCG00000003557 I 0.919
ENSSTOG00000004329 Ictidomys tridecemlineatus ENSSTOG00000004329 I 0.919
ENSTSYG00000011513 Tarsius syrichta ENSTSYG00000011513 I 0.919
LIN28A Tursiops truncatus ENSTTRG00000005678 I 0.919
ENSVPAG00000008073 Vicugna pacos ENSVPAG00000008073 I 0.919
ENSBTAP00000004196-D2 Bos grunniens ENSBTAP00000004196-D2 I 0.919
ENSP00000254231 Macaca fascicularis ENSP00000254231 I 0.919
Myotis_brandtii_Lin28a_10029661 Myotis brandtii Myotis_brandtii_Lin28a_10029661 I 0.919
Ogr09706 Ophisaurus gracilis Ogr09706 I 0.919
ENSMMUG00000032211 Macaca mulatta ENSMMUG00000032211 I 0.872
yakA12818 Bos grunniens yakA12818 I 0.865
lin28a Takifugu rubripes ENSTRUG00000009454 I 0.811