YBX2 (Oryctolagus cuniculus)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSOCUG00000015064 T164683_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YBX1
M04661_2.00 		Homo sapiens
GRTGGWACR
YGTWCCAYC		 SELEX
Yin et al.(2017)
YBX1_eDBD_HT-SELEX 		0.877 0.877
YBX1
M10411_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YB1_Q3 		0.877 0.877
YBX1
M10412_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YB1_Q4 		0.877 0.877
YBX1
M04662_2.00 		Homo sapiens
GRTGKDRCD
HGYHMCAYC		 SELEX
Yin et al.(2017)
YBX1_eDBD_Methyl-HT-SELEX 		0.877 0.877
NEMVEDRAFT_v1g104083
M01207_2.00 		Nematostella vectensis
NNNDDHRN
NYDHHNNN		 PBM
Lambert et al.(2019)
pTH9768 		0.702 0.702
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOCUP00000012948 CSD 58 118

Links

Other CSD family TFs
Other Oryctolagus cuniculus TFs

250 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
YBX1 Homo sapiens ENSG00000065978 D 0.939
WUBG_03960 Wuchereria bancrofti WUBG_03960 I 0.702
ACYPI003867 Acyrthosiphon pisum ACYPI003867 I 0.789
AGAP006108 Anopheles gambiae AGAP006108 I 0.754
BGIBMGA000526 Bombyx mori BGIBMGA000526 I 0.772
Bm3781 Brugia malayi Bm3781 I 0.702
CapteG105284 Capitella teleta CapteG105284 I 0.719
CapteG121832 Capitella teleta CapteG121832 I 0.765
CapteG166603 Capitella teleta CapteG166603 I 0.789
CapteG48958 Capitella teleta CapteG48958 I 0.719
CapteG58124 Capitella teleta CapteG58124 I 0.702
ENSAMEG00000000494 Ailuropoda melanoleuca ENSAMEG00000000494 I 0.877
ENSAMEG00000009393 Ailuropoda melanoleuca ENSAMEG00000009393 I 0.877
ENSAMEG00000015874 Ailuropoda melanoleuca ENSAMEG00000015874 I 0.754
ENSAMEG00000016564 Ailuropoda melanoleuca ENSAMEG00000016564 I 0.773
ENSAMXG00000014478 Astyanax mexicanus ENSAMXG00000014478 I 0.877
ENSAPLG00000003147 Anas platyrhynchos ENSAPLG00000003147 I 0.877
ENSAPLG00000004899 Anas platyrhynchos ENSAPLG00000004899 I 0.877
YBX2 Bos taurus ENSBTAG00000009126 I 0.773
YBX3 Bos taurus ENSBTAG00000009663 I 0.877
YBX1 Bos taurus ENSBTAG00000017368 I 0.877
YBX1 Canis familiaris ENSCAFG00000002541 I 0.877
ENSCAFG00000005162 Canis familiaris ENSCAFG00000005162 I 0.776
YBX3 Canis familiaris ENSCAFG00000013401 I 0.877
ENSCAFG00000016128 Canis familiaris ENSCAFG00000016128 I 0.773
ENSCAFG00000016520 Canis familiaris ENSCAFG00000016520 I 0.772
ENSCAFG00000016523 Canis familiaris ENSCAFG00000016523 I 0.772
ENSCAFG00000017286 Canis familiaris ENSCAFG00000017286 I 0.860
ENSCAFG00000030502 Canis familiaris ENSCAFG00000030502 I 0.712
YBX3 Choloepus hoffmanni ENSCHOG00000011988 I 0.877
ENSCJAG00000003155 Callithrix jacchus ENSCJAG00000003155 I 0.877
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.807
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.860
YBX2 Callithrix jacchus ENSCJAG00000016581 I 0.773
ENSCJAG00000021660 Callithrix jacchus ENSCJAG00000021660 I 0.877
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.825
ENSCJAG00000031891 Callithrix jacchus ENSCJAG00000031891 I 0.814
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.742
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.825
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.825
ENSCJAG00000035469 Callithrix jacchus ENSCJAG00000035469 I 0.807
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.773
YBX1 Cavia porcellus ENSCPOG00000010888 I 0.877
YBX3 Cavia porcellus ENSCPOG00000011329 I 0.877
ENSCSAG00000001168 Chlorocebus sabaeus ENSCSAG00000001168 I 0.807
ENSCSAG00000008744 Chlorocebus sabaeus ENSCSAG00000008744 I 0.877
ENSCSAG00000011857 Chlorocebus sabaeus ENSCSAG00000011857 I 0.773
ybx1 Danio rerio ENSDARG00000004757 I 0.877
YBX2 Dasypus novemcinctus ENSDNOG00000013746 I 0.773
ENSDNOG00000040947 Dasypus novemcinctus ENSDNOG00000040947 I 0.772
Ybx3 Dipodomys ordii ENSDORG00000009103 I 0.877
Ybx2 Dipodomys ordii ENSDORG00000010882 I 0.719
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.877
YBX2 Equus caballus ENSECAG00000009996 I 0.773
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.860
YBX3 Equus caballus ENSECAG00000013777 I 0.877
ENSECAG00000023592 Equus caballus ENSECAG00000023592 I 0.877
YBX1 Erinaceus europaeus ENSEEUG00000005657 I 0.877
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.727
YBX3 Erinaceus europaeus ENSEEUG00000010415 I 0.877
YBX3 Echinops telfairi ENSETEG00000002557 I 0.877
YBX2 Echinops telfairi ENSETEG00000014271 I 0.719
ENSFALG00000003661 Ficedula albicollis ENSFALG00000003661 I 0.877
ENSFALG00000010305 Ficedula albicollis ENSFALG00000010305 I 0.889
YBX2 Felis catus ENSFCAG00000018097 I 0.773
ENSFCAG00000022604 Felis catus ENSFCAG00000022604 I 0.979
YBX3 Felis catus ENSFCAG00000027748 I 0.877
YBX2 Homo sapiens ENSG00000006047 I 0.758
YBX3 Homo sapiens ENSG00000060138 I 0.877
ybx1 Gasterosteus aculeatus ENSGACG00000006447 I 0.877
YBX1 Gallus gallus ENSGALG00000004848 I 0.877
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.877
YBX3 Gorilla gorilla ENSGGOG00000001352 I 0.940
ENSGGOG00000004758 Gorilla gorilla ENSGGOG00000004758 I 0.939
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.825
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.837
ENSGMOG00000015216 Gadus morhua ENSGMOG00000015216 I 0.842
ENSLACG00000018135 Latimeria chalumnae ENSLACG00000018135 I 0.877
ENSLAFG00000007597 Loxodonta africana ENSLAFG00000007597 I 0.877
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.941
YBX3 Loxodonta africana ENSLAFG00000017247 I 0.877
YBX1 Loxodonta africana ENSLAFG00000031170 I 0.923
ENSLOCG00000002530 Lepisosteus oculatus ENSLOCG00000002530 I 0.877
ENSLOCG00000013819 Lepisosteus oculatus ENSLOCG00000013819 I 0.860
ENSMEUG00000009893 Macropus eugenii ENSMEUG00000009893 I 0.973
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.877
YBX3 Meleagris gallopavo ENSMGAG00000014224 I 0.877
ENSMICG00000004602 Microcebus murinus ENSMICG00000004602 I 0.702
YBX2 Microcebus murinus ENSMICG00000012453 I 0.825
ENSMICG00000014984 Microcebus murinus ENSMICG00000014984 I 0.877
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.738
YBX3 Myotis lucifugus ENSMLUG00000007476 I 0.959
ENSMLUG00000024638 Myotis lucifugus ENSMLUG00000024638 I 0.878
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.877
YBX3 Macaca mulatta ENSMMUG00000022469 I 0.877
ENSMMUG00000022712 Macaca mulatta ENSMMUG00000022712 I 0.773
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.754
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.877
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.758
YBX3 Monodelphis domestica ENSMODG00000018248 I 0.860
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.825
ENSMPUG00000010386 Mustela putorius furo ENSMPUG00000010386 I 0.842
ENSMPUG00000011810 Mustela putorius furo ENSMPUG00000011810 I 0.843
ENSMPUG00000013922 Mustela putorius furo ENSMPUG00000013922 I 0.860
ENSMPUG00000018977 Mustela putorius furo ENSMPUG00000018977 I 0.772
Ybx2 Mus musculus ENSMUSG00000018554 I 0.773
Ybx1 Mus musculus ENSMUSG00000028639 I 0.877
Ybx3 Mus musculus ENSMUSG00000030189 I 0.877
ENSNLEG00000008063 Nomascus leucogenys ENSNLEG00000008063 I 0.773
ENSNLEG00000012324 Nomascus leucogenys ENSNLEG00000012324 I 0.877
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.877
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.877
ENSOARG00000011562 Ovis aries ENSOARG00000011562 I 0.773
ENSOARG00000020447 Ovis aries ENSOARG00000020447 I 0.877
ENSOARG00000020919 Ovis aries ENSOARG00000020919 I 0.877
ENSOCUG00000000147 Oryctolagus cuniculus ENSOCUG00000000147 I 0.853
YBX3 Oryctolagus cuniculus ENSOCUG00000001889 I 0.787
ENSOCUG00000028047 Oryctolagus cuniculus ENSOCUG00000028047 I 0.979
YBX2 Otolemur garnettii ENSOGAG00000004392 I 0.773
YBX1 Otolemur garnettii ENSOGAG00000006784 I 0.877
ENSOGAG00000014939 Otolemur garnettii ENSOGAG00000014939 I 0.789
ENSOGAG00000024681 Otolemur garnettii ENSOGAG00000024681 I 0.719
ENSOGAG00000030360 Otolemur garnettii ENSOGAG00000030360 I 0.719
ENSOGAG00000030653 Otolemur garnettii ENSOGAG00000030653 I 0.754
ENSOGAG00000032929 Otolemur garnettii ENSOGAG00000032929 I 0.772
ENSONIG00000002062 Oreochromis niloticus ENSONIG00000002062 I 0.877
ENSONIG00000018954 Oreochromis niloticus ENSONIG00000018954 I 0.772
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.773
ybx1 Oryzias latipes ENSORLG00000004225 I 0.877
ENSPANG00000005177 Papio anubis ENSPANG00000005177 I 0.825
ENSPANG00000010280 Papio anubis ENSPANG00000010280 I 0.877
ENSPANG00000013156 Papio anubis ENSPANG00000013156 I 0.877
ENSPANG00000016576 Papio anubis ENSPANG00000016576 I 0.877
ENSPANG00000019627 Papio anubis ENSPANG00000019627 I 0.842
ENSPANG00000024250 Papio anubis ENSPANG00000024250 I 0.773
YBX3 Procavia capensis ENSPCAG00000001397 I 0.754
YBX2 Procavia capensis ENSPCAG00000008019 I 0.773
ENSPFOG00000011441 Poecilia formosa ENSPFOG00000011441 I 0.877
ENSPPYG00000004279 Pongo abelii ENSPPYG00000004279 I 0.877
ENSPSIG00000009247 Pelodiscus sinensis ENSPSIG00000009247 I 0.877
ENSPSIG00000011017 Pelodiscus sinensis ENSPSIG00000011017 I 0.877
ENSPSIG00000012364 Pelodiscus sinensis ENSPSIG00000012364 I 0.773
YBX3 Pan troglodytes ENSPTRG00000004681 I 0.940
YBX1 Pan troglodytes ENSPTRG00000006456 I 0.727
YBX2 Pan troglodytes ENSPTRG00000008673 I 0.758
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.877
YBX3 Pteropus vampyrus ENSPVAG00000006740 I 0.877
Ybx3 Rattus norvegicus ENSRNOG00000005480 I 0.877
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.773
Ybx1 Rattus norvegicus ENSRNOG00000023786 I 0.877
LOC100912427 Rattus norvegicus ENSRNOG00000032902 I 0.807
YBX2 Sorex araneus ENSSARG00000000488 I 0.877
ENSSARG00000012628 Sorex araneus ENSSARG00000012628 I 0.719
ENSSHAG00000003262 Sarcophilus harrisii ENSSHAG00000003262 I 0.860
ENSSHAG00000007786 Sarcophilus harrisii ENSSHAG00000007786 I 0.847
ENSSHAG00000011350 Sarcophilus harrisii ENSSHAG00000011350 I 0.929
ENSSHAG00000014452 Sarcophilus harrisii ENSSHAG00000014452 I 0.877
YBX3 Sus scrofa ENSSSCG00000000633 I 0.877
YBX2 Sus scrofa ENSSSCG00000017938 I 0.773
ENSSSCG00000028485 Sus scrofa ENSSSCG00000028485 I 0.742
ENSSSCG00000030357 Sus scrofa ENSSSCG00000030357 I 0.773
ENSSTOG00000000116 Ictidomys tridecemlineatus ENSSTOG00000000116 I 0.807
ENSSTOG00000002108 Ictidomys tridecemlineatus ENSSTOG00000002108 I 0.959
ENSSTOG00000008630 Ictidomys tridecemlineatus ENSSTOG00000008630 I 0.773
ENSSTOG00000022212 Ictidomys tridecemlineatus ENSSTOG00000022212 I 0.772
ENSSTOG00000026413 Ictidomys tridecemlineatus ENSSTOG00000026413 I 0.772
ENSSTOG00000027979 Ictidomys tridecemlineatus ENSSTOG00000027979 I 0.772
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.773
YBX3 Tupaia belangeri ENSTBEG00000012570 I 0.877
YBX3 Taeniopygia guttata ENSTGUG00000012047 I 0.877
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.877
ybx1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.877
ybx1 Takifugu rubripes ENSTRUG00000015333 I 0.877
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.797
YBX3 Tursiops truncatus ENSTTRG00000008045 I 0.979
YBX2 Tursiops truncatus ENSTTRG00000009780 I 0.719
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.877
YBX3 Vicugna pacos ENSVPAG00000000876 I 0.702
YBX2 Vicugna pacos ENSVPAG00000003104 I 0.825
ENSXMAG00000018674 Xiphophorus maculatus ENSXMAG00000018674 I 0.877
HelroG133388 Helobdella robusta HelroG133388 I 0.719
KGM_01291 Danaus plexippus KGM_01291 I 0.772
LOAG_17966 Loa loa LOAG_17966 I 0.702
LotgiG78612 Lottia gigantea LotgiG78612 I 0.825
PHUM156710 Pediculus humanus PHUM156710 I 0.772
Ppa-cey-1 Pristionchus pacificus PPA28011 I 0.719
RPRC001993 Rhodnius prolixus RPRC001993 I 0.737
SINV21160 Solenopsis invicta SINV21160 I 0.851
SPU_003107 Strongylocentrotus purpuratus SPU_003107 I 0.754
TC013925 Tribolium castaneum TC013925 I 0.754
WBGene00247949 Onchocerca volvulus WBGene00247949 I 0.702
Aan_R001440 Calypte anna Aan_R001440 I 0.877
Aan_R014295 Calypte anna Aan_R014295 I 0.877
Afo_R006672 Aptenodytes forsteri Afo_R006672 I 0.979
Afo_R014263 Aptenodytes forsteri Afo_R014263 I 0.877
Alligator_sinensis_CCG005029.1 Alligator sinensis Alligator_sinensis_CCG005029.1 I 0.773
Alligator_sinensis_CCG014301.1 Alligator sinensis Alligator_sinensis_CCG014301.1 I 0.923
Brh_R007443 Buceros rhinoceros Brh_R007443 I 0.877
Brh_R010004 Buceros rhinoceros Brh_R010004 I 0.979
Cflo_08983--XP_393344.3_APIME Camponotus floridanus Cflo_08983--XP_393344.3_APIME I 0.719
Cmyd_10003103 Chelonia mydas Cmyd_10003103 I 0.973
ENSBTAP00000012735-D1 Bos grunniens ENSBTAP00000012735-D1 I 0.877
ENSMMUP00000017257 Macaca fascicularis ENSMMUP00000017257 I 0.742
ENSP00000007699-D1 Bos grunniens ENSP00000007699-D1 I 0.773
ENSP00000228251 Macaca fascicularis ENSP00000228251 I 0.877
ENSP00000389639-D2 Bos grunniens ENSP00000389639-D2 I 0.825
Gfo_R007354 Geospiza fortis Gfo_R007354 I 0.877
Gfo_R009480 Geospiza fortis Gfo_R009480 I 0.979
Myotis_brandtii_YBX1_10016780 Myotis brandtii Myotis_brandtii_YBX1_10016780 I 0.938
Myotis_brandtii_YBX2_10021025 Myotis brandtii Myotis_brandtii_YBX2_10021025 I 0.825
Ogr02658 Ophisaurus gracilis Ogr02658 I 0.939
Ogr10632 Ophisaurus gracilis Ogr10632 I 0.773
Pvit_07856 Pogona vitticeps Pvit_07856 I 0.962
Pvit_10025 Pogona vitticeps Pvit_10025 I 0.877
Tal_R003478 Tyto alba Tal_R003478 I 0.946
Tal_R011198 Tyto alba Tal_R011198 I 0.979
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.825
Sakowv30002198m.g Saccoglossus kowalevskii Sakowv30002198m.g I 0.842
AAH42217 Xenopus laevis AAH42217 I 0.877
AAI30161 Xenopus laevis AAI30161 I 0.877
CAA42778 Xenopus laevis CAA42778 I 0.877
LDEC002142 Leptinotarsa decemlineata LDEC002142 I 0.754
ybx3 Xenopus tropicalis XB-GENE-1007558 I 0.727
ybx1 Xenopus tropicalis XB-GENE-480746 I 0.877
ybx2 Xenopus tropicalis XB-GENE-5798907 I 0.773
ybx2.L Xenopus laevis XB-GENE-6252609 I 0.877
ybx2.S Xenopus laevis XB-GENE-6254213 I 0.860
ybx1.S Xenopus laevis XB-GENE-865405 I 0.877
AALB005039 Anopheles albimanus AALB005039 I 0.754
AARA007412 Anopheles arabiensis AARA007412 I 0.754
ACHR003797 Anopheles christyi ACHR003797 I 0.754
ACOM024661 Anopheles coluzzii ACOM024661 I 0.754
ACUA007180 Anopheles culicifacies ACUA007180 I 0.754
AEPI000589 Anopheles epiroticus AEPI000589 I 0.754
AFUN005441 Anopheles funestus AFUN005441 I 0.754
AMEC011905 Anopheles melas AMEC011905 I 0.754
AMEM010049 Anopheles merus AMEM010049 I 0.754
AMIN009954 Anopheles minimus AMIN009954 I 0.754
AQUA011660 Anopheles quadriannulatus AQUA011660 I 0.754
ASTEI02878 Anopheles stephensi ASTEI02878 I 0.754
MDOA013639 Musca domestica MDOA013639 I 0.754
D918_04890 Trichuris suis D918_04890 I 0.719
DME_0000984901 Dracunculus medinensis DME_0000984901 I 0.702
EEL_0000726801 Elaeophora elaphi EEL_0000726801 I 0.702
GPUH_0001124501 Gongylonema pulchrum GPUH_0001124501 I 0.702
nAv.1.0.1.g07732 Acanthocheilonema viteae nAv.1.0.1.g07732 I 0.702
nDi.2.2.2.g07679 Dirofilaria immitis nDi.2.2.2.g07679 I 0.702
nLs.2.1.2.g03745 Litomosoides sigmodontis nLs.2.1.2.g03745 I 0.702
nOo.2.0.1.g01690 Onchocerca ochengi nOo.2.0.1.g01690 I 0.702
T265_06248 Opisthorchis viverrini T265_06248 I 0.702