CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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LIN28B
(
Oryctolagus cuniculus
)
CSD
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00313 (CSD)
IPR002059
ENSOCUG00000017850
T164684_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LIN28B
M04663_2.00
Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG
SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX
1.000
1.000
LIN28B
M04664_2.00
Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG
SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX
1.000
1.000
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOCUP00000015330
CSD
1
62
MGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKSSKGLESIRVTGP
Links
Other
CSD
family TFs
Other
Oryctolagus cuniculus
TFs
134 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29929.m004641
Ricinus communis
29929.m004641
I
POPTR_0003s17120
Populus trichocarpa
POPTR_0003s17120
I
POPTR_0001s13890
Populus trichocarpa
POPTR_0001s13890
I
PGSC0003DMG400026736
Solanum tuberosum
PGSC0003DMG400026736
I
GSMUA_Achr9G23140_001
Musa acuminata
GSMUA_Achr9G23140_001
I
VIT_01s0010g03710
Vitis vinifera
VIT_01s0010g03710
I
GSMUA_Achr4G12470_001
Musa acuminata
GSMUA_Achr4G12470_001
I
mgf019346m
Mimulus guttatus
mgf019346m
I
evm.TU.supercontig_43.66
Carica papaya
evm.TU.supercontig_43.66
I
SapurV1A.0056s0240
Salix purpurea
SapurV1A.0056s0240
I
BRADI3G05510
Brachypodium distachyon
BRADI3G05510
I
SapurV1A.1271s0060
Salix purpurea
SapurV1A.1271s0060
I
ORUFI06G25590
Oryza rufipogon
ORUFI06G25590
N
ORGLA06G0199900
Oryza glaberrima
ORGLA06G0199900
N
ORUFI02G03180
Oryza rufipogon
ORUFI02G03180
N
ONIVA06G27990
Oryza nivara
ONIVA06G27990
N
OS02G0139400
Oryza sativa
OS02G0139400
N
SPL11
Oryza sativa
OS06G0663500
N
Sb04g003175
Sorghum bicolor
Sb04g003175
N
Sb04g004940
Sorghum bicolor
Sb04g004940
N
Si017749m.g
Setaria italica
Si017749m.g
N
Traes_6AS_32A35158A
Triticum aestivum
Traes_6AS_32A35158A
N
Traes_6DS_C4D93239C
Triticum aestivum
Traes_6DS_C4D93239C
N
mgf010397m
Mimulus guttatus
mgf010397m
N
Pavir.Ab00499
Panicum virgatum
Pavir.Ab00499
N
Pavir.J20730
Panicum virgatum
Pavir.J20730
N
MLOC_62426
Hordeum vulgare
MLOC_62426
N
BGIOSGA020731
Oryza indica
BGIOSGA020731
N
GRMZM2G065451
Zea mays
GRMZM2G065451
N
GRMZM2G097275
Zea mays
GRMZM2G097275
N
GRMZM2G126827
Zea mays
GRMZM2G126827
N
GRMZM2G156621
Zea mays
GRMZM2G156621
N
GRMZM2G163813
Zea mays
GRMZM2G163813
N
GSMUA_Achr10G02970_001
Musa acuminata
GSMUA_Achr10G02970_001
N
GSMUA_Achr3G05360_001
Musa acuminata
GSMUA_Achr3G05360_001
N
GSMUA_Achr5G22630_001
Musa acuminata
GSMUA_Achr5G22630_001
N
LPERR02G02980
Leersia perrieri
LPERR02G02980
N
LPERR06G19770
Leersia perrieri
LPERR06G19770
N
ORGLA02G0030600
Oryza glaberrima
ORGLA02G0030600
N
OB02G12930
Oryza brachyantha
OB02G12930
N
OB06G31550
Oryza brachyantha
OB06G31550
N
OBART02G03260
Oryza barthii
OBART02G03260
N
OBART06G23820
Oryza barthii
OBART06G23820
N
OGLUM06G25070
Oryza glumaepatula
OGLUM06G25070
N
OLONG_025693
Oryza longistaminata
OLONG_025693
N
OMERI02G03900
Oryza meridionalis
OMERI02G03900
N
ONIVA02G03070
Oryza nivara
ONIVA02G03070
N
SPL3
Oryza indica
BGIOSGA007499
N
OPUNC02G02570
Oryza punctata
OPUNC02G02570
N