LIN28B (Oryctolagus cuniculus)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSOCUG00000017850 T164684_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LIN28B
M04663_2.00
Homo sapiens
CGCGRWRDRRCDGCG

CGCHGYYHYWYCGCG
SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX
1.000 1.000
LIN28B
M04664_2.00
Homo sapiens
CGCGRTRNNRCDGCG

CGCHGYNNYAYCGCG
SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX
1.000 1.000
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOCUP00000015330 CSD 1 62

Links

Other CSD family TFs
Other Oryctolagus cuniculus TFs

134 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29929.m004641 Ricinus communis 29929.m004641 I
POPTR_0003s17120 Populus trichocarpa POPTR_0003s17120 I
POPTR_0001s13890 Populus trichocarpa POPTR_0001s13890 I
PGSC0003DMG400026736 Solanum tuberosum PGSC0003DMG400026736 I
GSMUA_Achr9G23140_001 Musa acuminata GSMUA_Achr9G23140_001 I
VIT_01s0010g03710 Vitis vinifera VIT_01s0010g03710 I
GSMUA_Achr4G12470_001 Musa acuminata GSMUA_Achr4G12470_001 I
mgf019346m Mimulus guttatus mgf019346m I
evm.TU.supercontig_43.66 Carica papaya evm.TU.supercontig_43.66 I
SapurV1A.0056s0240 Salix purpurea SapurV1A.0056s0240 I
BRADI3G05510 Brachypodium distachyon BRADI3G05510 I
SapurV1A.1271s0060 Salix purpurea SapurV1A.1271s0060 I
ORUFI06G25590 Oryza rufipogon ORUFI06G25590 N
ORGLA06G0199900 Oryza glaberrima ORGLA06G0199900 N
ORUFI02G03180 Oryza rufipogon ORUFI02G03180 N
ONIVA06G27990 Oryza nivara ONIVA06G27990 N
OS02G0139400 Oryza sativa OS02G0139400 N
SPL11 Oryza sativa OS06G0663500 N
Sb04g003175 Sorghum bicolor Sb04g003175 N
Sb04g004940 Sorghum bicolor Sb04g004940 N
Si017749m.g Setaria italica Si017749m.g N
Traes_6AS_32A35158A Triticum aestivum Traes_6AS_32A35158A N
Traes_6DS_C4D93239C Triticum aestivum Traes_6DS_C4D93239C N
mgf010397m Mimulus guttatus mgf010397m N
Pavir.Ab00499 Panicum virgatum Pavir.Ab00499 N
Pavir.J20730 Panicum virgatum Pavir.J20730 N
MLOC_62426 Hordeum vulgare MLOC_62426 N
BGIOSGA020731 Oryza indica BGIOSGA020731 N
GRMZM2G065451 Zea mays GRMZM2G065451 N
GRMZM2G097275 Zea mays GRMZM2G097275 N
GRMZM2G126827 Zea mays GRMZM2G126827 N
GRMZM2G156621 Zea mays GRMZM2G156621 N
GRMZM2G163813 Zea mays GRMZM2G163813 N
GSMUA_Achr10G02970_001 Musa acuminata GSMUA_Achr10G02970_001 N
GSMUA_Achr3G05360_001 Musa acuminata GSMUA_Achr3G05360_001 N
GSMUA_Achr5G22630_001 Musa acuminata GSMUA_Achr5G22630_001 N
LPERR02G02980 Leersia perrieri LPERR02G02980 N
LPERR06G19770 Leersia perrieri LPERR06G19770 N
ORGLA02G0030600 Oryza glaberrima ORGLA02G0030600 N
OB02G12930 Oryza brachyantha OB02G12930 N
OB06G31550 Oryza brachyantha OB06G31550 N
OBART02G03260 Oryza barthii OBART02G03260 N
OBART06G23820 Oryza barthii OBART06G23820 N
OGLUM06G25070 Oryza glumaepatula OGLUM06G25070 N
OLONG_025693 Oryza longistaminata OLONG_025693 N
OMERI02G03900 Oryza meridionalis OMERI02G03900 N
ONIVA02G03070 Oryza nivara ONIVA02G03070 N
SPL3 Oryza indica BGIOSGA007499 N
OPUNC02G02570 Oryza punctata OPUNC02G02570 N