LIN28B (Otolemur garnettii)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSOGAG00000011042 T164698_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LIN28B
M04663_2.00 		Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX 		1.000 1.000
LIN28B
M04664_2.00 		Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX 		1.000 1.000
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOGAP00000009883 CSD 30 102

Links

Other CSD family TFs
Other Otolemur garnettii TFs

144 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GATA12 Arabidopsis thaliana AT5G25830 D
Eucgr.C00602 Eucalyptus grandis Eucgr.C00602 I
cassava15946.m1 Manihot esculenta cassava15946.m1 I
Ciclev10008690m.g Citrus clementina Ciclev10008690m.g I
Carubv10001360m.g Capsella rubella Carubv10001360m.g I
Cagra.0701s0033 Capsella grandiflora Cagra.0701s0033 I
Bostr.29827s0236 Boechera stricta Bostr.29827s0236 I
Aquca_069_00048 Aquilegia coerulea Aquca_069_00048 I
Aquca_013_00753 Aquilegia coerulea Aquca_013_00753 I
mgf023969m Mimulus guttatus mgf023969m I
mgf010496m Mimulus guttatus mgf010496m I
Cucsa.361150 Cucumis sativus Cucsa.361150 I
Cucsa.312530 Cucumis sativus Cucsa.312530 I
Cucsa.038810 Cucumis sativus Cucsa.038810 I
cassava34898.m1 Manihot esculenta cassava34898.m1 I
cassava24279.valid.m1 Manihot esculenta cassava24279.valid.m1 I
PK13609.1 Cannabis sativa PK13609.1 I
evm.TU.supercontig_78.7 Carica papaya evm.TU.supercontig_78.7 I
gene08990-v1.0-hybrid Fragaria vesca gene08990-v1.0-hybrid I
Gorai.003G062900 Gossypium raimondii Gorai.003G062900 I
Gorai.004G288400 Gossypium raimondii Gorai.004G288400 I
Gorai.009G049300 Gossypium raimondii Gorai.009G049300 I
Gorai.010G106100 Gossypium raimondii Gorai.010G106100 I
Lus10023684.g Linum usitatissimum Lus10023684.g I
Lus10028178.g Linum usitatissimum Lus10028178.g I
MDP0000290156 Malus domestica MDP0000290156 I
MDP0000528111 Malus domestica MDP0000528111 I
orange1.1g017390m.g Citrus sinensis orange1.1g017390m.g I
SapurV1A.0272s0170 Salix purpurea SapurV1A.0272s0170 I
SapurV1A.0291s0020 Salix purpurea SapurV1A.0291s0020 I
Thhalv10004553m.g Eutrema salsugineum Thhalv10004553m.g I
AMTR_s00056p00080350 Amborella trichopoda AMTR_s00056p00080350 I
GSMUA_Achr6G26330_001 Musa acuminata GSMUA_Achr6G26330_001 I
Bo1g008730 Brassica oleracea Bo1g008730 I
Bo1g008780 Brassica oleracea Bo1g008780 I
Bo7g095690 Brassica oleracea Bo7g095690 I
Bo7g115890 Brassica oleracea Bo7g115890 I
Bo9g011180 Brassica oleracea Bo9g011180 I
Bra009864 Brassica rapa Bra009864 I
Bra011393 Brassica rapa Bra011393 I
Bra036555 Brassica rapa Bra036555 I
Bra037037 Brassica rapa Bra037037 I
GLYMA04G08990 Glycine max GLYMA04G08990 I
GLYMA06G09080 Glycine max GLYMA06G09080 I
GLYMA17G27110 Glycine max GLYMA17G27110 I
GSMUA_Achr3G31720_001 Musa acuminata GSMUA_Achr3G31720_001 I
GSMUA_Achr4G02630_001 Musa acuminata GSMUA_Achr4G02630_001 I
GSMUA_Achr4G10460_001 Musa acuminata GSMUA_Achr4G10460_001 I
cassava1071.valid.m1 Manihot esculenta cassava1071.valid.m1 I
LPERR05G19030 Leersia perrieri LPERR05G19030 I
POPTR_0006s25410 Populus trichocarpa POPTR_0006s25410 I
POPTR_0018s08090 Populus trichocarpa POPTR_0018s08090 I
PRUPE_ppa007038mg Prunus persica PRUPE_ppa007038mg I
PRUPE_ppa017460mg Prunus persica PRUPE_ppa017460mg I
TCM_028861 Theobroma cacao TCM_028861 I
TCM_037205 Theobroma cacao TCM_037205 I
VIT_04s0008g03270 Vitis vinifera VIT_04s0008g03270 I
Cla000908 Citrullus lanatus Cla000908 I
Cla012861 Citrullus lanatus Cla012861 I
Cla020871 Citrullus lanatus Cla020871 I
Cla023462 Citrullus lanatus Cla023462 I
Pm013440 Prunus mume Pm013440 I
30146.m003524 Ricinus communis 30146.m003524 I