Cmyd_10002115 (Chelonia mydas)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00313 (CSD) IPR002059 Cmyd_10002115 T165299_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YBX1
M04661_2.00 		Homo sapiens
GRTGGWACR
YGTWCCAYC		 SELEX
Yin et al.(2017)
YBX1_eDBD_HT-SELEX 		1.000 1.000
YBX1
M10411_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YB1_Q3 		1.000 1.000
YBX1
M10412_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YB1_Q4 		1.000 1.000
YBX1
M04662_2.00 		Homo sapiens
GRTGKDRCD
HGYHMCAYC		 SELEX
Yin et al.(2017)
YBX1_eDBD_Methyl-HT-SELEX 		1.000 1.000
NEMVEDRAFT_v1g104083
M01207_2.00 		Nematostella vectensis
NNNDDHRN
NYDHHNNN		 PBM
Lambert et al.(2019)
pTH9768 		0.806 0.806
cey-1
M01903_2.00 		Caenorhabditis elegans
NNNGRTRDD
HHYAYCNNN		 PBM
Weirauch et al.(2014)
pTH8991 		0.722 0.722
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10002115 CSD 1 40

Links

Other CSD family TFs
Other Chelonia mydas TFs

243 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
THAP3 Macaca mulatta ENSMMUG00000002047 N
Myotis_brandtii_THAP3_10024041 Myotis brandtii Myotis_brandtii_THAP3_10024041 N
ENSBTAP00000014893-D1 Bos grunniens ENSBTAP00000014893-D1 N
THAP3 Tursiops truncatus ENSTTRG00000006348 N
ENSSTOG00000003655 Ictidomys tridecemlineatus ENSSTOG00000003655 N
ENSSSCG00000003378 Sus scrofa ENSSSCG00000003378 N
ENSSHAG00000008023 Sarcophilus harrisii ENSSHAG00000008023 N
THAP3 Pan troglodytes ENSPTRG00000000093 N
ENSPSIG00000004751 Pelodiscus sinensis ENSPSIG00000004751 N
ENSPPYG00000001935 Pongo abelii ENSPPYG00000001935 N
ENSPANG00000000281 Papio anubis ENSPANG00000000281 N
THAP3 Otolemur garnettii ENSOGAG00000029491 N
ENSOARG00000011230 Ovis aries ENSOARG00000011230 N
ENSOANG00000029971 Ornithorhynchus anatinus ENSOANG00000029971 N
ENSNLEG00000008620 Nomascus leucogenys ENSNLEG00000008620 N
ENSAMEG00000009609 Ailuropoda melanoleuca ENSAMEG00000009609 N
THAP3 Myotis lucifugus ENSMLUG00000029196 N
ENSMEUG00000002039 Macropus eugenii ENSMEUG00000002039 N
THAP3 Loxodonta africana ENSLAFG00000015981 N
ENSGGOG00000006842 Gorilla gorilla ENSGGOG00000006842 N
THAP3 Homo sapiens ENSG00000041988 N
THAP3 Felis catus ENSFCAG00000000662 N
THAP3 Erinaceus europaeus ENSEEUG00000003448 N
THAP3 Equus caballus ENSECAG00000009778 N
THAP3 Dasypus novemcinctus ENSDNOG00000013851 N
ENSCSAG00000000749 Chlorocebus sabaeus ENSCSAG00000000749 N
THAP3 Callithrix jacchus ENSCJAG00000000237 N
THAP3 Canis familiaris ENSCAFG00000019625 N
THAP3 Bos taurus ENSBTAG00000011214 N