Cmyd_10002115 (Chelonia mydas)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00313 (CSD) IPR002059 Cmyd_10002115 T165299_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YBX1
M04661_2.00 		Homo sapiens
GRTGGWACR
YGTWCCAYC		 SELEX
Yin et al.(2017)
YBX1_eDBD_HT-SELEX 		1.000 1.000
YBX1
M10411_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YB1_Q3 		1.000 1.000
YBX1
M10412_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YB1_Q4 		1.000 1.000
YBX1
M04662_2.00 		Homo sapiens
GRTGKDRCD
HGYHMCAYC		 SELEX
Yin et al.(2017)
YBX1_eDBD_Methyl-HT-SELEX 		1.000 1.000
NEMVEDRAFT_v1g104083
M01207_2.00 		Nematostella vectensis
NNNDDHRN
NYDHHNNN		 PBM
Lambert et al.(2019)
pTH9768 		0.806 0.806
cey-1
M01903_2.00 		Caenorhabditis elegans
NNNGRTRDD
HHYAYCNNN		 PBM
Weirauch et al.(2014)
pTH8991 		0.722 0.722
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10002115 CSD 1 40

Links

Other CSD family TFs
Other Chelonia mydas TFs

243 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000000494 Ailuropoda melanoleuca ENSAMEG00000000494 I 1.000
ENSAMEG00000009393 Ailuropoda melanoleuca ENSAMEG00000009393 I 1.000
ENSAMXG00000014478 Astyanax mexicanus ENSAMXG00000014478 I 1.000
ENSAPLG00000003147 Anas platyrhynchos ENSAPLG00000003147 I 1.000
ENSAPLG00000004899 Anas platyrhynchos ENSAPLG00000004899 I 1.000
YBX3 Bos taurus ENSBTAG00000009663 I 1.000
YBX1 Bos taurus ENSBTAG00000017368 I 1.000
YBX1 Canis familiaris ENSCAFG00000002541 I 1.000
YBX3 Canis familiaris ENSCAFG00000013401 I 1.000
YBX3 Choloepus hoffmanni ENSCHOG00000011988 I 1.000
ENSCJAG00000003155 Callithrix jacchus ENSCJAG00000003155 I 1.000
ENSCJAG00000021660 Callithrix jacchus ENSCJAG00000021660 I 1.000
YBX1 Cavia porcellus ENSCPOG00000010888 I 1.000
YBX3 Cavia porcellus ENSCPOG00000011329 I 1.000
ENSCSAG00000001168 Chlorocebus sabaeus ENSCSAG00000001168 I 1.000
ENSCSAG00000008744 Chlorocebus sabaeus ENSCSAG00000008744 I 1.000
ybx1 Danio rerio ENSDARG00000004757 I 1.000
Ybx3 Dipodomys ordii ENSDORG00000009103 I 1.000
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 1.000
YBX3 Equus caballus ENSECAG00000013777 I 1.000
ENSECAG00000023592 Equus caballus ENSECAG00000023592 I 1.000
YBX1 Erinaceus europaeus ENSEEUG00000005657 I 1.000
YBX3 Erinaceus europaeus ENSEEUG00000010415 I 1.000
YBX3 Echinops telfairi ENSETEG00000002557 I 1.000
ENSFALG00000003661 Ficedula albicollis ENSFALG00000003661 I 1.000
YBX3 Felis catus ENSFCAG00000027748 I 1.000
YBX3 Homo sapiens ENSG00000060138 I 1.000
YBX1 Homo sapiens ENSG00000065978 D 1.000
ybx1 Gasterosteus aculeatus ENSGACG00000006447 I 1.000
YBX1 Gallus gallus ENSGALG00000004848 I 1.000
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 1.000
YBX3 Gorilla gorilla ENSGGOG00000001352 I 1.000
ENSLACG00000018135 Latimeria chalumnae ENSLACG00000018135 I 1.000
ENSLAFG00000007597 Loxodonta africana ENSLAFG00000007597 I 1.000
YBX3 Loxodonta africana ENSLAFG00000017247 I 1.000
ENSLOCG00000002530 Lepisosteus oculatus ENSLOCG00000002530 I 1.000
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 1.000
YBX3 Meleagris gallopavo ENSMGAG00000014224 I 1.000
ENSMICG00000014984 Microcebus murinus ENSMICG00000014984 I 1.000
ENSMLUG00000029452 Myotis lucifugus ENSMLUG00000029452 I 1.000
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 1.000
YBX3 Macaca mulatta ENSMMUG00000022469 I 1.000
YBX1 Monodelphis domestica ENSMODG00000017214 I 1.000
ENSMPUG00000013922 Mustela putorius furo ENSMPUG00000013922 I 1.000
Ybx1 Mus musculus ENSMUSG00000028639 I 1.000
Ybx3 Mus musculus ENSMUSG00000030189 I 1.000
ENSNLEG00000012324 Nomascus leucogenys ENSNLEG00000012324 I 1.000
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 1.000
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 1.000
ENSOARG00000020447 Ovis aries ENSOARG00000020447 I 1.000
ENSOARG00000020919 Ovis aries ENSOARG00000020919 I 1.000
ENSOCUG00000024588 Oryctolagus cuniculus ENSOCUG00000024588 I 1.000
YBX1 Otolemur garnettii ENSOGAG00000006784 I 1.000
ENSONIG00000002062 Oreochromis niloticus ENSONIG00000002062 I 1.000
ybx1 Oryzias latipes ENSORLG00000004225 I 1.000
ENSPANG00000010280 Papio anubis ENSPANG00000010280 I 1.000
ENSPANG00000013156 Papio anubis ENSPANG00000013156 I 1.000
ENSPANG00000016576 Papio anubis ENSPANG00000016576 I 1.000
ENSPFOG00000011441 Poecilia formosa ENSPFOG00000011441 I 1.000
ENSPPYG00000004279 Pongo abelii ENSPPYG00000004279 I 1.000
ENSPSIG00000009247 Pelodiscus sinensis ENSPSIG00000009247 I 1.000
ENSPSIG00000011017 Pelodiscus sinensis ENSPSIG00000011017 I 1.000
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 1.000
YBX3 Pteropus vampyrus ENSPVAG00000006740 I 1.000
Ybx3 Rattus norvegicus ENSRNOG00000005480 I 1.000
Ybx1 Rattus norvegicus ENSRNOG00000023786 I 1.000
ENSSHAG00000014452 Sarcophilus harrisii ENSSHAG00000014452 I 1.000
YBX3 Sus scrofa ENSSSCG00000000633 I 1.000
ENSSTOG00000000116 Ictidomys tridecemlineatus ENSSTOG00000000116 I 1.000
YBX3 Tupaia belangeri ENSTBEG00000012570 I 1.000
YBX3 Taeniopygia guttata ENSTGUG00000012047 I 1.000
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 1.000
ybx1 Tetraodon nigroviridis ENSTNIG00000011989 I 1.000
ybx1 Takifugu rubripes ENSTRUG00000015333 I 1.000
YBX1 Vicugna pacos ENSVPAG00000000068 I 1.000
ENSXMAG00000018674 Xiphophorus maculatus ENSXMAG00000018674 I 1.000
Aan_R001440 Calypte anna Aan_R001440 I 1.000
Aan_R014295 Calypte anna Aan_R014295 I 1.000
Afo_R014263 Aptenodytes forsteri Afo_R014263 I 1.000
Brh_R007443 Buceros rhinoceros Brh_R007443 I 1.000
ENSBTAP00000012735-D1 Bos grunniens ENSBTAP00000012735-D1 I 1.000
ENSP00000228251 Macaca fascicularis ENSP00000228251 I 1.000
ENSP00000389639-D2 Bos grunniens ENSP00000389639-D2 I 1.000
Gfo_R007354 Geospiza fortis Gfo_R007354 I 1.000
Pvit_10025 Pogona vitticeps Pvit_10025 I 1.000
AAH42217 Xenopus laevis AAH42217 I 1.000
AAI30161 Xenopus laevis AAI30161 I 1.000
CAA42778 Xenopus laevis CAA42778 I 1.000
ybx1 Xenopus tropicalis XB-GENE-480746 I 1.000
ybx2.L Xenopus laevis XB-GENE-6252609 I 1.000
ybx2.S Xenopus laevis XB-GENE-6254213 I 1.000
ybx1.S Xenopus laevis XB-GENE-865405 I 1.000
Cmyd_10003103 Chelonia mydas Cmyd_10003103 I 0.973
Tal_R003478 Tyto alba Tal_R003478 I 0.973
ENSCAFG00000017286 Canis familiaris ENSCAFG00000017286 I 0.972
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.972
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.972
ENSGMOG00000015216 Gadus morhua ENSGMOG00000015216 I 0.972
ENSLOCG00000013819 Lepisosteus oculatus ENSLOCG00000013819 I 0.972
YBX2 Microcebus murinus ENSMICG00000012453 I 0.972
YBX3 Monodelphis domestica ENSMODG00000018248 I 0.972
ENSMPUG00000010386 Mustela putorius furo ENSMPUG00000010386 I 0.972
ENSOCUG00000021258 Oryctolagus cuniculus ENSOCUG00000021258 I 0.972
ENSOCUG00000022716 Oryctolagus cuniculus ENSOCUG00000022716 I 0.972
ENSPANG00000005177 Papio anubis ENSPANG00000005177 I 0.972
ENSSHAG00000003262 Sarcophilus harrisii ENSSHAG00000003262 I 0.972
YBX2 Vicugna pacos ENSVPAG00000003104 I 0.972
Cmyd_10000339 Chelonia mydas Cmyd_10000339 I 0.972
Myotis_brandtii_YBX2_10021025 Myotis brandtii Myotis_brandtii_YBX2_10021025 I 0.972
Sakowv30002198m.g Saccoglossus kowalevskii Sakowv30002198m.g I 0.972
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.944
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.944
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.944
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.944
ENSOCUG00000026608 Oryctolagus cuniculus ENSOCUG00000026608 I 0.944
ENSPANG00000019627 Papio anubis ENSPANG00000019627 I 0.944
LOC100912427 Rattus norvegicus ENSRNOG00000032902 I 0.944
YBX2 Sorex araneus ENSSARG00000000488 I 0.944
LotgiG78612 Lottia gigantea LotgiG78612 I 0.944
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.944
Alligator_sinensis_CCG014301.1 Alligator sinensis Alligator_sinensis_CCG014301.1 I 0.923
CapteG166603 Capitella teleta CapteG166603 I 0.917
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.917
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.917
ACYPI003867 Acyrthosiphon pisum ACYPI003867 I 0.889
ENSCJAG00000035469 Callithrix jacchus ENSCJAG00000035469 I 0.889
ENSOGAG00000014939 Otolemur garnettii ENSOGAG00000014939 I 0.889
ENSOCUG00000000147 Oryctolagus cuniculus ENSOCUG00000000147 I 0.882
ENSGGOG00000023840 Gorilla gorilla ENSGGOG00000023840 I 0.861
ENSOGAG00000024681 Otolemur garnettii ENSOGAG00000024681 I 0.861
ENSOGAG00000030653 Otolemur garnettii ENSOGAG00000030653 I 0.861
PHUM156710 Pediculus humanus PHUM156710 I 0.861
CLEC013418 Cimex lectularius CLEC013418 I 0.861
HHAL001434-PA Halyomorpha halys HHAL001434-PA I 0.861
YBX1 Loxodonta africana ENSLAFG00000031170 I 0.846
WUBG_03960 Wuchereria bancrofti WUBG_03960 I 0.833
Bm3781 Brugia malayi Bm3781 I 0.833
CapteG105284 Capitella teleta CapteG105284 I 0.833
CapteG48958 Capitella teleta CapteG48958 I 0.833
ENSCAFG00000016520 Canis familiaris ENSCAFG00000016520 I 0.833
ENSCAFG00000016523 Canis familiaris ENSCAFG00000016523 I 0.833
ENSDNOG00000040947 Dasypus novemcinctus ENSDNOG00000040947 I 0.833
ENSMPUG00000018977 Mustela putorius furo ENSMPUG00000018977 I 0.833
ENSOGAG00000030360 Otolemur garnettii ENSOGAG00000030360 I 0.833
ENSONIG00000018954 Oreochromis niloticus ENSONIG00000018954 I 0.833
ENSSTOG00000022212 Ictidomys tridecemlineatus ENSSTOG00000022212 I 0.833
ENSSTOG00000026413 Ictidomys tridecemlineatus ENSSTOG00000026413 I 0.833
ENSSTOG00000027979 Ictidomys tridecemlineatus ENSSTOG00000027979 I 0.833
LOAG_17966 Loa loa LOAG_17966 I 0.833
RPRC001993 Rhodnius prolixus RPRC001993 I 0.833
WBGene00247949 Onchocerca volvulus WBGene00247949 I 0.833
MDOA013639 Musca domestica MDOA013639 I 0.833
D918_04890 Trichuris suis D918_04890 I 0.833
DME_0000984901 Dracunculus medinensis DME_0000984901 I 0.833
EEL_0000726801 Elaeophora elaphi EEL_0000726801 I 0.833
GPUH_0001124501 Gongylonema pulchrum GPUH_0001124501 I 0.833
nAv.1.0.1.g07732 Acanthocheilonema viteae nAv.1.0.1.g07732 I 0.833
nDi.2.2.2.g07679 Dirofilaria immitis nDi.2.2.2.g07679 I 0.833
nLs.2.1.2.g03745 Litomosoides sigmodontis nLs.2.1.2.g03745 I 0.833
nOo.2.0.1.g01690 Onchocerca ochengi nOo.2.0.1.g01690 I 0.833
ENSMLUG00000024638 Myotis lucifugus ENSMLUG00000024638 I 0.829
ENSSHAG00000011350 Sarcophilus harrisii ENSSHAG00000011350 I 0.810
CpipJ_CPIJ002248 Culex pipiens CpipJ_CPIJ002248 I 0.806
AGAP006108 Anopheles gambiae AGAP006108 I 0.806
CapteG58124 Capitella teleta CapteG58124 I 0.806
CPIJ002248 Culex quinquefasciatus CPIJ002248 I 0.806
ENSAMEG00000015874 Ailuropoda melanoleuca ENSAMEG00000015874 I 0.806
ENSOGAG00000031268 Otolemur garnettii ENSOGAG00000031268 I 0.806
ENSOGAG00000032929 Otolemur garnettii ENSOGAG00000032929 I 0.806
ENSPPYG00000001466 Pongo abelii ENSPPYG00000001466 I 0.806
ENSSARG00000012628 Sorex araneus ENSSARG00000012628 I 0.806
Ppa-cey-1 Pristionchus pacificus PPA28011 I 0.806
LDEC002142 Leptinotarsa decemlineata LDEC002142 I 0.806
AALB005039 Anopheles albimanus AALB005039 I 0.806
AARA007412 Anopheles arabiensis AARA007412 I 0.806
ACHR003797 Anopheles christyi ACHR003797 I 0.806
ACOM024661 Anopheles coluzzii ACOM024661 I 0.806
ACUA007180 Anopheles culicifacies ACUA007180 I 0.806
AEPI000589 Anopheles epiroticus AEPI000589 I 0.806
AFUN005441 Anopheles funestus AFUN005441 I 0.806
AMEC011905 Anopheles melas AMEC011905 I 0.806
AMEM010049 Anopheles merus AMEM010049 I 0.806
AMIN009954 Anopheles minimus AMIN009954 I 0.806
AQUA011660 Anopheles quadriannulatus AQUA011660 I 0.806
ASTEI02878 Anopheles stephensi ASTEI02878 I 0.806
nRc.2.0.1.g10725 Romanomermis culicivorax nRc.2.0.1.g10725 I 0.806
HelroG133388 Helobdella robusta HelroG133388 I 0.778
KGM_01291 Danaus plexippus KGM_01291 I 0.778
SPU_003107 Strongylocentrotus purpuratus SPU_003107 I 0.778
L596_g21676 Steinernema carpocapsae L596_g21676 I 0.778
L892_g19487 Steinernema scapterisci L892_g19487 I 0.778
L893_g29692 Steinernema glaseri L893_g29692 I 0.778
PTRK_0000206200 Parastrongyloides trichosuri PTRK_0000206200 I 0.778
T265_06248 Opisthorchis viverrini T265_06248 I 0.778
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.767
YBX3 Tursiops truncatus ENSTTRG00000008045 I 0.766
CapteG121832 Capitella teleta CapteG121832 I 0.765
CapteG50229 Capitella teleta CapteG50229 I 0.750
ENSAMEG00000008685 Ailuropoda melanoleuca ENSAMEG00000008685 I 0.750
ENSFCAG00000022604 Felis catus ENSFCAG00000022604 I 0.750
ENSOCUG00000028047 Oryctolagus cuniculus ENSOCUG00000028047 I 0.750
ENSORLG00000018683 Oryzias latipes ENSORLG00000018683 I 0.750
ENSSSCG00000022235 Sus scrofa ENSSSCG00000022235 I 0.750
ENSSSCG00000028681 Sus scrofa ENSSSCG00000028681 I 0.750
ML01365a Mnemiopsis leidyi ML01365a I 0.750
Afo_R006672 Aptenodytes forsteri Afo_R006672 I 0.750
Brh_R010004 Buceros rhinoceros Brh_R010004 I 0.750
Gfo_R009480 Geospiza fortis Gfo_R009480 I 0.750
Tal_R011198 Tyto alba Tal_R011198 I 0.750
Minc12652 Meloidogyne incognita Minc12652 I 0.750
genemark-nMf.1.1.scaf00296-processed-gene-0.4 Meloidogyne floridensis genemark-nMf.1.1.scaf00296-processed-gene-0.4 I 0.750
Hba_02103 Heterorhabditis bacteriophora Hba_02103 I 0.750
MhA1_Contig2458.frz3.gene1 Meloidogyne hapla MhA1_Contig2458.frz3.gene1 I 0.750
RSKR_0000861200 Rhabditophanes kr3021 RSKR_0000861200 I 0.750
SPAL_0000982100 Strongyloides papillosus SPAL_0000982100 I 0.750
SSTP_0000685800 Strongyloides stercoralis SSTP_0000685800 I 0.750
SVE_1573400 Strongyloides venezuelensis SVE_1573400 I 0.750
TRE_0001884901 Trichobilharzia regenti TRE_0001884901 I 0.750
ENSGGOG00000004758 Gorilla gorilla ENSGGOG00000004758 I 0.735
YBX3 Myotis lucifugus ENSMLUG00000007476 I 0.735
ENSSTOG00000002108 Ictidomys tridecemlineatus ENSSTOG00000002108 I 0.735
Ogr02658 Ophisaurus gracilis Ogr02658 I 0.735
Myotis_brandtii_YBX1_10016780 Myotis brandtii Myotis_brandtii_YBX1_10016780 I 0.729
ENSBTAG00000045616 Bos taurus ENSBTAG00000045616 I 0.722
ENSMICG00000004602 Microcebus murinus ENSMICG00000004602 I 0.722
ENSOARG00000004633 Ovis aries ENSOARG00000004633 I 0.722
YBX3 Vicugna pacos ENSVPAG00000000876 I 0.722
cey-1 Caenorhabditis elegans WBGene00000472 D 0.722
ACAC_0000909201 Angiostrongylus cantonensis ACAC_0000909201 I 0.722
ACOC_0000576201 Angiostrongylus costaricensis ACOC_0000576201 I 0.722
ANCCAN_14498 Ancylostoma caninum ANCCAN_14498 I 0.722
ANCCEY_03875 Ancylostoma ceylanicum ANCCEY_03875 I 0.722
ANCDUO_02786 Ancylostoma duodenale ANCDUO_02786 I 0.722
DICVIV_10680 Dictyocaulus viviparus DICVIV_10680 I 0.722
HPBE_0000695301 Heligmosomoides bakeri HPBE_0000695301 I 0.722
NBR_0000795701 Nippostrongylus brasiliensis NBR_0000795701 I 0.722
NECAME_15956 Necator americanus NECAME_15956 I 0.722
OESDEN_18169 Oesophagostomum dentatum OESDEN_18169 I 0.722
SBAD_0000071701 Soboliphyme baturini SBAD_0000071701 I 0.722
SVUK_0001307901 Strongylus vulgaris SVUK_0001307901 I 0.722
TELCIR_06115 Teladorsagia circumcincta TELCIR_06115 I 0.722
YBX3 Pan troglodytes ENSPTRG00000004681 I 0.720
ENSMEUG00000009893 Macropus eugenii ENSMEUG00000009893 I 0.703