Gfo_R013982 (Geospiza fortis)
CxxC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02008 (zf-CXXC) IPR002857 Gfo_R013982 T168614_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ENSMGAG00000004157_CONSTRUCT
M01920_2.00 		PBM CONSTRUCTS
NNNNRVGBNN
NNVCBYNNNN		 PBM
Weirauch et al.(2014)
pTH9719 		1.000 1.000
TET1
M01914_2.00 		Homo sapiens
NNHVCGHNN
NNDCGBDNN		 PBM
Weirauch et al.(2014)
pTH9605 		0.762 0.762
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R013982 CxxC 8 49

Links

Other CxxC family TFs
Other Geospiza fortis TFs

46 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.005G126000 Gossypium raimondii Gorai.005G126000 I 0.000
Cla013002 Citrullus lanatus Cla013002 I 0.000
Pm022106 Prunus mume Pm022106 I 0.000
30000.m000371 Ricinus communis 30000.m000371 I 0.000
cassava7989.valid.m1 Manihot esculenta cassava7989.valid.m1 I 0.000
Cucsa.095510 Cucumis sativus Cucsa.095510 I 0.000
mgf003368m Mimulus guttatus mgf003368m I 0.000
mgf012360m Mimulus guttatus mgf012360m I 0.000
Cagra.5954s0011 Capsella grandiflora Cagra.5954s0011 I 0.000
Ciclev10018669m.g Citrus clementina Ciclev10018669m.g I 0.000
evm.TU.supercontig_9.328 Carica papaya evm.TU.supercontig_9.328 I 0.000
gene16194-v1.0-hybrid Fragaria vesca gene16194-v1.0-hybrid I 0.000
Gorai.005G013500 Gossypium raimondii Gorai.005G013500 I 0.000
Ca_13679 Cicer arietinum Ca_13679 I 0.000
Lus10008143.g Linum usitatissimum Lus10008143.g I 0.000
Lus10019368.g Linum usitatissimum Lus10019368.g I 0.000
MDP0000239938 Malus domestica MDP0000239938 I 0.000
MDP0000246881 Malus domestica MDP0000246881 I 0.000
MDP0000265619 Malus domestica MDP0000265619 I 0.000
orange1.1g001774m.g Citrus sinensis orange1.1g001774m.g I 0.000
SapurV1A.1186s0030 Salix purpurea SapurV1A.1186s0030 I 0.000
PK00728.1 Cannabis sativa PK00728.1 I 0.000
PK12462.1 Cannabis sativa PK12462.1 I 0.000
chr3.CM0106.760.nc Lotus japonicus chr3.CM0106.760.nc I 0.000
chr3.LjT23H01.20.nc Lotus japonicus chr3.LjT23H01.20.nc I 0.000
PDK_20s1507761g001 Phoenix dactylifera PDK_20s1507761g001 I 0.000
ONIVA11G08980 Oryza nivara ONIVA11G08980 I 0.000
BGIOSGA034185 Oryza indica BGIOSGA034185 I 0.000
BRADI4G20730 Brachypodium distachyon BRADI4G20730 I 0.000
GLYMA11G13390 Glycine max GLYMA11G13390 I 0.000
GLYMA12G05390 Glycine max GLYMA12G05390 I 0.000
GLYMA13G42160 Glycine max GLYMA13G42160 I 0.000
GLYMA15G03225 Glycine max GLYMA15G03225 I 0.000
GSMUA_AchrUn_randomG00660_001 Musa acuminata GSMUA_AchrUn_randomG00660_001 I 0.000
MTR_2g099350 Medicago truncatula MTR_2g099350 I 0.000
MTR_4g068000 Medicago truncatula MTR_4g068000 I 0.000
OGLUM11G08660 Oryza glumaepatula OGLUM11G08660 I 0.000
OLONG_006342 Oryza longistaminata OLONG_006342 I 0.000
OMERI11G08010 Oryza meridionalis OMERI11G08010 I 0.000
AMTR_s00066p00148680 Amborella trichopoda AMTR_s00066p00148680 I 0.000
OPUNC11G08590 Oryza punctata OPUNC11G08590 I 0.000
ORGLA11G0080000 Oryza glaberrima ORGLA11G0080000 I 0.000
ORUFI11G09500 Oryza rufipogon ORUFI11G09500 I 0.000
PGSC0003DMG400013140 Solanum tuberosum PGSC0003DMG400013140 I 0.000
POPTR_0007s01530 Populus trichocarpa POPTR_0007s01530 I 0.000
POPTR_0017s04980 Populus trichocarpa POPTR_0017s04980 I 0.000
PRUPE_ppa000933mg Prunus persica PRUPE_ppa000933mg I 0.000
Solyc11g045350.1 Solanum lycopersicum Solyc11g045350.1 I 0.000
TCM_019949 Theobroma cacao TCM_019949 I 0.000
VIT_05s0094g00020 Vitis vinifera VIT_05s0094g00020 I 0.000
Ca_02703 Cicer arietinum Ca_02703 I 0.000