Ciclev10020979m.g (Citrus clementina)
E2F

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02319 (E2F_TDP) IPR003316 Ciclev10020979m.g T173917_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
E2FE
M01958_2.00 		Arabidopsis thaliana
HDSGCGCSHD
HDSGCGCSHD		 PBM
Weirauch et al.(2014)
pTH8176 		0.787 0.787
E2FE
M06873_2.00 		Arabidopsis thaliana
TTTTGGCGGGAAAWWNWNDDN
NHHNWNWWTTTCCCGCCAAAA		 Dap-seq
OMalley et al.(2016)
DEL1_col_a 		0.787 0.787
E2FE
M06874_2.00 		Arabidopsis thaliana
DTTTTGGCGGGAAAA
TTTTCCCGCCAAAAH		 Dap-seq
OMalley et al.(2016)
DEL1_colamp_a 		0.787 0.787
E2FD
M06875_2.00 		Arabidopsis thaliana
DWWHDDTTTTGGCGGGAAAW
WTTTCCCGCCAAAAHHDWWH		 Dap-seq
OMalley et al.(2016)
DEL2_col_a 		0.618 0.618
E2FD
M06876_2.00 		Arabidopsis thaliana
DTTTTGGCGGGAAAA
TTTTCCCGCCAAAAH		 Dap-seq
OMalley et al.(2016)
DEL2_colamp_a 		0.618 0.618
E2FD
M10442_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$E2L1_Q2 		0.618 0.618
E2FD
M10443_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$E2L_Q2 		0.618 0.618
E2F7
M02960_2.00 		Homo sapiens
WTTTGGCGGGAAAH
DTTTCCCGCCAAAW		 SELEX
Jolma et al.(2013)
E2F7_1 		0.562 0.562
E2F7
M04705_2.00 		Homo sapiens
WTTTGGCGGGAAAN
NTTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F7_eDBD_HT-SELEX 		0.562 0.562
E2F7
M09033_2.00 		Homo sapiens
NDGGCGGGRRNDV
BHNYYCCCGCCHN		 Misc
Kulakovskiy et al.(2013)
E2F7_HUMAN.H11MO.0.B 		0.562 0.562
E2f7
M09040_2.00 		Mus musculus
NDGGCGGGRRNDV
BHNYYCCCGCCHN		 Misc
Kulakovskiy et al.(2013)
E2F7_MOUSE.H11MO.0.C 		0.562 0.562
E2F7
M09522_2.00 		Homo sapiens
NSGCGSGAAMNN
NNKTTCSCGCSN		 Misc
Heinz et al.(2010)
Hela-E2F7_GSE32673 		0.562 0.562
E2F7
M04706_2.00 		Homo sapiens
WTTTGGCGGGAAAH
DTTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F7_eDBD_Methyl-HT-SELEX 		0.562 0.562
E2F8
M02959_2.00 		Homo sapiens
TTTGGCGGGAAA
TTTCCCGCCAAA		 SELEX
Jolma et al.(2013)
E2F8_1 		0.539 0.539
E2F8
M04703_2.00 		Homo sapiens
WDKTGGCGGGARNN
NNYTCCCGCCAMHW		 SELEX
Yin et al.(2017)
E2F8_eDBD_HT-SELEX 		0.539 0.539
E2F8
M04704_2.00 		Homo sapiens
WTTTGGCGGGAAWN
NWTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F8_eDBD_Methyl-HT-SELEX 		0.539 0.539
For this family, TFs with SR scores > 0.429 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10020979m E2F 25 43
Ciclev10020979m E2F 114 193

Links

Other E2F family TFs
Other Citrus clementina TFs

122 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TBX15 Homo sapiens ENSG00000092607 D
Bm3498 Brugia malayi Bm3498 I
TBX15 Canis familiaris ENSCAFG00000009976 I
TBX10 Canis familiaris ENSCAFG00000011264 I
TBX15 Callithrix jacchus ENSCJAG00000005662 I
TBX15 Cavia porcellus ENSCPOG00000000615 I
ENSCSAVG00000000786 Ciona savignyi ENSCSAVG00000000786 I
ENSDORG00000012736 Dipodomys ordii ENSDORG00000012736 I
TBX15 Equus caballus ENSECAG00000023325 I
TBX15 Felis catus ENSFCAG00000023731 I
TBX15 Gorilla gorilla ENSGGOG00000013468 I
TBX15 Loxodonta africana ENSLAFG00000018452 I
TBX15 Myotis lucifugus ENSMLUG00000002958 I
TBX15 Macaca mulatta ENSMMUG00000009257 I
TBX15 Monodelphis domestica ENSMODG00000005319 I
ENSMPUG00000001549 Mustela putorius furo ENSMPUG00000001549 I
Tbx15 Mus musculus ENSMUSG00000027868 I
Tbx22 Mus musculus ENSMUSG00000031241 I
ENSOANG00000020395 Ornithorhynchus anatinus ENSOANG00000020395 I
ENSOANG00000029773 Ornithorhynchus anatinus ENSOANG00000029773 I
ENSOARG00000020376 Ovis aries ENSOARG00000020376 I
TBX15 Oryctolagus cuniculus ENSOCUG00000012320 I
TBX15 Ochotona princeps ENSOPRG00000004847 I
ENSPANG00000004604 Papio anubis ENSPANG00000004604 I
ENSPPYG00000000968 Pongo abelii ENSPPYG00000000968 I
TBX15 Pan troglodytes ENSPTRG00000001172 I
TBX20 Pteropus vampyrus ENSPVAG00000010267 I
TBX15 Pteropus vampyrus ENSPVAG00000015733 I
Tbx15 Rattus norvegicus ENSRNOG00000019565 I
ENSSARG00000007424 Sorex araneus ENSSARG00000007424 I
ENSSHAG00000012785 Sarcophilus harrisii ENSSHAG00000012785 I
TBX15 Sus scrofa ENSSSCG00000006725 I
ENSSTOG00000008381 Ictidomys tridecemlineatus ENSSTOG00000008381 I
ENSSTOG00000013040 Ictidomys tridecemlineatus ENSSTOG00000013040 I
ENSTGUG00000013354 Taeniopygia guttata ENSTGUG00000013354 I
tbx18 Takifugu rubripes ENSTRUG00000001419 I
tbx15 Takifugu rubripes ENSTRUG00000003945 I
TBX5 Vicugna pacos ENSVPAG00000009445 I
ENSVPAG00000010265 Vicugna pacos ENSVPAG00000010265 I
SINV17750 Solenopsis invicta SINV17750 I
ENSP00000358437-D1 Bos grunniens ENSP00000358437-D1 I
ENSP00000358437 Macaca fascicularis ENSP00000358437 I
Gfo_R000255 Geospiza fortis Gfo_R000255 I
Hsal_04126--XP_001122560.1_APIME Harpegnathos saltator Hsal_04126--XP_001122560.1_APIME I
Myotis_brandtii_Tbx15_10011211 Myotis brandtii Myotis_brandtii_Tbx15_10011211 I
ACEP16054 Atta cephalotes ACEP16054 N
ACEP16128 Atta cephalotes ACEP16128 N
ACEP18777 Atta cephalotes ACEP18777 N
ADAC010198 Anopheles darlingi ADAC010198 N
AGAP011712 Anopheles gambiae AGAP011712 N
BGIBMGA003174 Bombyx mori BGIBMGA003174 N
BGIBMGA006719 Bombyx mori BGIBMGA006719 N
BGIBMGA012898 Bombyx mori BGIBMGA012898 N
ENSCJAG00000000826 Callithrix jacchus ENSCJAG00000000826 N
ENSETEG00000007920 Echinops telfairi ENSETEG00000007920 N
ENSFALG00000004082 Ficedula albicollis ENSFALG00000004082 N
ENSMEUG00000005348 Macropus eugenii ENSMEUG00000005348 N
ENSPCAG00000011680 Procavia capensis ENSPCAG00000011680 N
ENSXMAG00000002873 Xiphophorus maculatus ENSXMAG00000002873 N
ENSXMAG00000005990 Xiphophorus maculatus ENSXMAG00000005990 N
GF19461 Drosophila ananassae FBgn0096470 N
GG18707 Drosophila erecta FBgn0110916 N
GD16691 Drosophila simulans FBgn0188280 N
HMEL004264 Heliconius melpomene HMEL004264 N
ISCW019287 Ixodes scapularis ISCW019287 N
KGM_15500 Danaus plexippus KGM_15500 N
L798_01365 Zootermopsis nevadensis L798_01365 N
L798_14238 Zootermopsis nevadensis L798_14238 N
MCINX015508 Melitaea cinxia MCINX015508 N
PPA14512 Pristionchus pacificus PPA14512 N
SINV10951 Solenopsis invicta SINV10951 N
SINV16738 Solenopsis invicta SINV16738 N
SINV20004 Solenopsis invicta SINV20004 N
Smp_156650 Schistosoma mansoni Smp_156650 N
YQE_06268 Dendroctonus ponderosae YQE_06268 N
YQE_10906 Dendroctonus ponderosae YQE_10906 N
Afo_R005342 Aptenodytes forsteri Afo_R005342 N
Alligator_sinensis_CCG010046.1 Alligator sinensis Alligator_sinensis_CCG010046.1 N
Brh_R011566 Buceros rhinoceros Brh_R011566 N
Cflo_02417--XP_001121225.1_APIME Camponotus floridanus Cflo_02417--XP_001121225.1_APIME N
Hsal_09269--XP_394607.3_APIME Harpegnathos saltator Hsal_09269--XP_394607.3_APIME N
Ogr11253 Ophisaurus gracilis Ogr11253 N
Tal_R004166 Tyto alba Tal_R004166 N
Tal_R010698 Tyto alba Tal_R010698 N
Ocbimv22013221m.g Octopus bimaculoides Ocbimv22013221m.g N
CLEC007098 Cimex lectularius CLEC007098 N
HHAL010563-PA Halyomorpha halys HHAL010563-PA N
LCUP008640 Lucilia cuprina LCUP008640 N
LDEC010813 Leptinotarsa decemlineata LDEC010813 N
SNAPOd2T00025688001 Oikopleura dioica SNAPOd2T00025688001 N
AALB000417 Anopheles albimanus AALB000417 N
AALB008493 Anopheles albimanus AALB008493 N
AARA011013 Anopheles arabiensis AARA011013 N
AATE002453 Anopheles atroparvus AATE002453 N
ACHR009374 Anopheles christyi ACHR009374 N
ACUA008906 Anopheles culicifacies ACUA008906 N
ACUA018702 Anopheles culicifacies ACUA018702 N
ACUA028082 Anopheles culicifacies ACUA028082 N
ADIR010892 Anopheles dirus ADIR010892 N
AEPI001841 Anopheles epiroticus AEPI001841 N
AEPI001845 Anopheles epiroticus AEPI001845 N
AEPI004511 Anopheles epiroticus AEPI004511 N
AFUN001004 Anopheles funestus AFUN001004 N
AFUN010567 Anopheles funestus AFUN010567 N
AMEM005938 Anopheles merus AMEM005938 N
AMEM014364 Anopheles merus AMEM014364 N
AMIN000991 Anopheles minimus AMIN000991 N
AMIN008749 Anopheles minimus AMIN008749 N
AQUA000257 Anopheles quadriannulatus AQUA000257 N
AQUA010449 Anopheles quadriannulatus AQUA010449 N
ASTEI10438 Anopheles stephensi ASTEI10438 N
BGLB011455 Biomphalaria glabrata BGLB011455 N
PPAI002123 Phlebotomus papatasi PPAI002123 N
PPAI007567 Phlebotomus papatasi PPAI007567 N
A_04261 Schistosoma haematobium A_04261 N
ANCCAN_04327 Ancylostoma caninum ANCCAN_04327 N
ANCCEY_00583 Ancylostoma ceylanicum ANCCEY_00583 N
ANCDUO_17822 Ancylostoma duodenale ANCDUO_17822 N
ANCDUO_24135 Ancylostoma duodenale ANCDUO_24135 N
ANCDUO_27140 Ancylostoma duodenale ANCDUO_27140 N
CGOC_0001264301 Cylicostephanus goldi CGOC_0001264301 N
D915_02167 Fasciola hepatica D915_02167 N
D915_04736 Fasciola hepatica D915_04736 N
DICVIV_10715 Dictyocaulus viviparus DICVIV_10715 N
DME_0000818901 Dracunculus medinensis DME_0000818901 N
ECANG7_07880 Echinococcus canadensis ECANG7_07880 N
ECPE_0000395601 Echinostoma caproni ECPE_0000395601 N
GPUH_0002190501 Gongylonema pulchrum GPUH_0002190501 N
HCOI01136500 Haemonchus contortus HCOI01136500 N
L596_g4935 Steinernema carpocapsae L596_g4935 N
L892_g20532 Steinernema scapterisci L892_g20532 N
NBR_0000542501 Nippostrongylus brasiliensis NBR_0000542501 N
NBR_0001177301 Nippostrongylus brasiliensis NBR_0001177301 N
NBR_0002182001 Nippostrongylus brasiliensis NBR_0002182001 N
NECAME_19347 Necator americanus NECAME_19347 N
nOo.2.0.1.g12879 Onchocerca ochengi nOo.2.0.1.g12879 N
OESDEN_02780 Oesophagostomum dentatum OESDEN_02780 N
OESDEN_07954 Oesophagostomum dentatum OESDEN_07954 N
OFLC_0001184101 Onchocerca flexuosa OFLC_0001184101 N
PXEA_0000704401 Protopolystoma xenopodis PXEA_0000704401 N
PXEA_0001803801 Protopolystoma xenopodis PXEA_0001803801 N
SMTD_0001100101 Schistosoma mattheei SMTD_0001100101 N
SMTD_0001779301 Schistosoma mattheei SMTD_0001779301 N
SMUV_0000075501 Syphacia muris SMUV_0000075501 N
SPER_0002063901 Spirometra erinaceieuropaei SPER_0002063901 N
SPER_0003769001 Spirometra erinaceieuropaei SPER_0003769001 N
SPER_0003779701 Spirometra erinaceieuropaei SPER_0003779701 N
SVUK_0001851801 Strongylus vulgaris SVUK_0001851801 N
TELCIR_17829 Teladorsagia circumcincta TELCIR_17829 N
TRE_0001207201 Trichobilharzia regenti TRE_0001207201 N
TsM_000926000 Taenia solium TsM_000926000 N
TsM_001062700 Taenia solium TsM_001062700 N