POPTR_0006s02150 (Populus trichocarpa)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03101 (FAR1) IPR004330 POPTR_0006s02150 T180082_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FHY3
M08114_2.00 		Arabidopsis thaliana
NHCACGCGCTNN
NNAGCGCGTGDN		 ChIP-seq
Mathelier et al.(2014)
MA0557.1 		0.900 0.900
FHY3
M09540_2.00 		Arabidopsis thaliana
NHSACGCGCBNN
NNVGCGCGTSDN		 Misc
Heinz et al.(2010)
Arabidopsis-FHY3_GSE30711 		0.900 0.900
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0006s02150.1 FAR1 87 189

Links

Other FAR1 family TFs
Other Populus trichocarpa TFs

46 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O3_06292 Capronia epimyces A1O3_06292 I
fgenesh1_pm.00153_#_158 Aspergillus carbonarius fgenesh1_pm.00153_#_158 I
BDDG_09051 Blastomyces dermatitidis BDDG_09051 N
ANIA_09050 Aspergillus nidulans CADANIAG00007803 N
HMPREF1541_04026 Cyphellophora europaea HMPREF1541_04026 N
PV05_02316 Exophiala xenobiotica PV05_02316 N
PV06_00594 Exophiala oligosperma PV06_00594 N