Carubv10012703m.g (Capsella rubella)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03101 (FAR1) IPR004330 Carubv10012703m.g T181270_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FAR1
M06880_2.00 		Arabidopsis thaliana
NNYHCACGCGCYDNH
DNHRGCGCGTGDRNN		 Dap-seq
OMalley et al.(2016)
FAR1_col_a 		0.933 0.933
FAR1
M06881_2.00 		Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD
HRGCGCGTGDRNNHNHVNNNN		 Dap-seq
OMalley et al.(2016)
FAR1_colamp_a 		0.933 0.933
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10012703m FAR1 65 153

Links

Other FAR1 family TFs
Other Capsella rubella TFs

30 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZNF398 Homo sapiens ENSG00000197024 D
ZNF398 Oryctolagus cuniculus ENSOCUG00000008416 I
Myotis_brandtii_ZNF398_10025637 Myotis brandtii Myotis_brandtii_ZNF398_10025637 I
ENSP00000338984 Macaca fascicularis ENSP00000338984 I
ENSTSYG00000002784 Tarsius syrichta ENSTSYG00000002784 I
ENSSTOG00000013384 Ictidomys tridecemlineatus ENSSTOG00000013384 I
Zfp398 Rattus norvegicus ENSRNOG00000006703 I
ZNF398 Pteropus vampyrus ENSPVAG00000010865 I
ZNF398 Pan troglodytes ENSPTRG00000023917 I
ENSPPYG00000018150 Pongo abelii ENSPPYG00000018150 I
ENSPANG00000015944 Papio anubis ENSPANG00000015944 I
ZNF398 Ochotona princeps ENSOPRG00000010531 I
ZNF398 Otolemur garnettii ENSOGAG00000016740 I
ZNF398 Bos taurus ENSBTAG00000020445 I
Zfp398 Mus musculus ENSMUSG00000062519 I
ENSMPUG00000006622 Mustela putorius furo ENSMPUG00000006622 I
ZNF398 Myotis lucifugus ENSMLUG00000007451 I
ENSMICG00000016618 Microcebus murinus ENSMICG00000016618 I
ZNF398 Gorilla gorilla ENSGGOG00000005812 I
ZNF398 Dasypus novemcinctus ENSDNOG00000038814 I
ENSCSAG00000007015 Chlorocebus sabaeus ENSCSAG00000007015 I
ZNF398 Callithrix jacchus ENSCJAG00000010213 I
ZNF398 Choloepus hoffmanni ENSCHOG00000007407 I
ZNF398 Canis familiaris ENSCAFG00000004429 I