Carubv10013009m.g (Capsella rubella)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03101 (FAR1) IPR004330 Carubv10013009m.g T181271_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FHY3
M08114_2.00 		Arabidopsis thaliana
NHCACGCGCTNN
NNAGCGCGTGDN		 ChIP-seq
Mathelier et al.(2014)
MA0557.1 		0.989 0.989
FHY3
M09540_2.00 		Arabidopsis thaliana
NHSACGCGCBNN
NNVGCGCGTSDN		 Misc
Heinz et al.(2010)
Arabidopsis-FHY3_GSE30711 		0.989 0.989
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10013009m FAR1 92 194

Links

Other FAR1 family TFs
Other Capsella rubella TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSSTOG00000003116 Ictidomys tridecemlineatus ENSSTOG00000003116 N
ENSOARG00000003667 Ovis aries ENSOARG00000003667 N
ZBTB47 Oryctolagus cuniculus ENSOCUG00000020899 N
ENSONIG00000005797 Oreochromis niloticus ENSONIG00000005797 N
ENSORLG00000009398 Oryzias latipes ENSORLG00000009398 N
ENSPANG00000008922 Papio anubis ENSPANG00000008922 N
ENSPFOG00000004330 Poecilia formosa ENSPFOG00000004330 N
ENSPPYG00000029781 Pongo abelii ENSPPYG00000029781 N
ENSPSIG00000018010 Pelodiscus sinensis ENSPSIG00000018010 N
Zbtb47 Rattus norvegicus ENSRNOG00000019382 N
ENSSHAG00000007698 Sarcophilus harrisii ENSSHAG00000007698 N
ZBTB47 Sus scrofa ENSSSCG00000030065 N
Zfp651 Mus musculus ENSMUSG00000013419 N
zbtb47b Tetraodon nigroviridis ENSTNIG00000001401 N
zbtb47b Takifugu rubripes ENSTRUG00000017575 N
ENSXMAG00000009463 Xiphophorus maculatus ENSXMAG00000009463 N
Afo_R014691 Aptenodytes forsteri Afo_R014691 N
Alligator_sinensis_CCG014704.1 Alligator sinensis Alligator_sinensis_CCG014704.1 N
Brh_R013849 Buceros rhinoceros Brh_R013849 N
Cmyd_10011645 Chelonia mydas Cmyd_10011645 N
ENSBTAP00000023089-D1 Bos grunniens ENSBTAP00000023089-D1 N
Ogr00204 Ophisaurus gracilis Ogr00204 N
zbtb47 Xenopus tropicalis XB-GENE-992955 N
ZBTB47 Felis catus ENSFCAG00000000532 N
ENSAMEG00000012484 Ailuropoda melanoleuca ENSAMEG00000012484 N
ENSAMXG00000014869 Astyanax mexicanus ENSAMXG00000014869 N
ENSAPLG00000012656 Anas platyrhynchos ENSAPLG00000012656 N
ZBTB47 Bos taurus ENSBTAG00000017365 N
ZBTB47 Canis familiaris ENSCAFG00000030889 N
ZBTB47 Callithrix jacchus ENSCJAG00000018096 N
ZBTB47 Cavia porcellus ENSCPOG00000025338 N
ENSCSAG00000016763 Chlorocebus sabaeus ENSCSAG00000016763 N
zbtb47a Danio rerio ENSDARG00000057751 N
zbtb47b Danio rerio ENSDARG00000079547 N
ENSFALG00000001000 Ficedula albicollis ENSFALG00000001000 N
ZBTB47 Anolis carolinensis ENSACAG00000006705 N
ZBTB47 Homo sapiens ENSG00000114853 N
ENSGALG00000005287 Gallus gallus ENSGALG00000005287 N
ZBTB47 Gorilla gorilla ENSGGOG00000000433 N
ZBTB47 Loxodonta africana ENSLAFG00000003570 N
ENSLOCG00000009647 Lepisosteus oculatus ENSLOCG00000009647 N
ENSMEUG00000013550 Macropus eugenii ENSMEUG00000013550 N
ZBTB47 Meleagris gallopavo ENSMGAG00000002353 N
ENSMICG00000009286 Microcebus murinus ENSMICG00000009286 N
ZBTB47 Monodelphis domestica ENSMODG00000013582 N
ENSMPUG00000011833 Mustela putorius furo ENSMPUG00000011833 N