CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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RO3G_04419
(
Rhizopus oryzae
)
Forkhead
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00250 (Forkhead)
IPR001766
RO3G_04419
T184391_2.00
Broad (2016-May-1)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HCM1
M00044_2.00
Saccharomyces cerevisiae
NRWHAACAN
NTGTTDWYN
PBM
Badis et al.(2008)
HCM1_2157
0.706
0.570
HCM1
M07473_2.00
Saccharomyces cerevisiae
VWMAACAH
DTGTTKWB
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0317.1
0.706
0.570
HCM1
M08554_2.00
Saccharomyces cerevisiae
VWMAACAH
DTGTTKWB
Misc
DeBoer et al.(2011)
YCR065W_570
0.706
0.570
NCU06173
M01992_2.00
Neurospora crassa
RTAAACAH
DTGTTTAY
PBM
Weirauch et al.(2014)
pTH8896
0.683
0.570
SPU_025010
M01988_2.00
Strongylocentrotus purpuratus
NNVNHHAYAN
NTRTDDNBNN
PBM
Weirauch et al.(2014)
pTH6641
0.679
0.570
Foxp2
M00792_2.00
Mus musculus
RTAAACAD
HTGTTTAY
PBM
Weirauch et al.(2013)
pTH1288
0.675
0.384
FOXP2
M05866_2.00
Homo sapiens
RTAAAYAWNN
NNWTRTTTAY
SMiLE-seq
Isakova et al.(2017)
FOXP2
0.675
0.384
FOXP2
M08116_2.00
Homo sapiens
NDGTAAACAVN
NBTGTTTACHN
ChIP-seq
Mathelier et al.(2014)
MA0593.1
0.675
0.384
FOXP2
M09089_2.00
Homo sapiens
DGTAAACAV
BTGTTTACH
Misc
Kulakovskiy et al.(2013)
FOXP2_HUMAN.H11MO.0.C
0.675
0.384
Foxp2
M09101_2.00
Mus musculus
NGTAAACAN
NTGTTTACN
Misc
Kulakovskiy et al.(2013)
FOXP2_MOUSE.H11MO.0.A
0.675
0.384
Foxk1
M00163_2.00
Mus musculus
RWMAACAA
TTGTTKWY
PBM
Badis et al.(2009)
Foxk1_2323
0.671
0.570
Foxk1
M03061_2.00
Mus musculus
CGGACACAATC
GATTGTGTCCG
SELEX
Jolma et al.(2013)
Foxk1_1
0.671
0.570
Foxk1
M03062_2.00
Mus musculus
RTAAACA
TGTTTAY
SELEX
Jolma et al.(2013)
Foxk1_2
0.671
0.570
Foxk1
M09113_2.00
Mus musculus
NNGDMAACAVV
BBTGTTKHCNN
Misc
Kulakovskiy et al.(2013)
FOXK1_MOUSE.H11MO.0.A
0.671
0.570
FOXK1
M01977_2.00
Homo sapiens
NNRWMMAYAN
NTRTKKWYNN
PBM
Weirauch et al.(2014)
pTH6108
0.671
0.558
FOXK1
M03025_2.00
Homo sapiens
CGGACACAAT
ATTGTGTCCG
SELEX
Jolma et al.(2013)
FOXK1_1
0.671
0.558
FOXK1
M04825_2.00
Homo sapiens
NDNRTMAAYAN
NTRTTKAYNHN
SELEX
Yin et al.(2017)
FOXK1_eDBD_HT-SELEX
0.671
0.558
FOXK1
M08120_2.00
Homo sapiens
NNNGTAAACANVNN
NNBNTGTTTACNNN
ChIP-seq
Mathelier et al.(2014)
MA0852.2
0.671
0.558
FOXK1
M09094_2.00
Homo sapiens
VNDRDAAACA
TGTTTHYHNB
Misc
Kulakovskiy et al.(2013)
FOXK1_HUMAN.H11MO.0.A
0.671
0.558
FOXK1
M04826_2.00
Homo sapiens
NWYRYAAWYAD
HTRWTTRYRWN
SELEX
Yin et al.(2017)
FOXK1_eDBD_Methyl-HT-SELEX
0.671
0.558
FOXI1
M03026_2.00
Homo sapiens
GTAAACA
TGTTTAC
SELEX
Jolma et al.(2013)
FOXI1_1
0.669
0.581
FOXI1
M03027_2.00
Homo sapiens
RTGTKTACGGTAAACAA
TTGTTTACCGTAMACAY
SELEX
Jolma et al.(2013)
FOXI1_2
0.669
0.581
FOXI1
M04827_2.00
Homo sapiens
NNNNNRTMAACAN
NTGTTKAYNNNNN
SELEX
Yin et al.(2017)
FOXI1_eDBD_HT-SELEX
0.669
0.581
FOXI1
M04829_2.00
Homo sapiens
AAYGTAAACAMW
WKTGTTTACRTT
SELEX
Yin et al.(2017)
FOXI1_FL_HT-SELEX
0.669
0.581
FOXI1
M09095_2.00
Homo sapiens
RRCCAATCAVAD
HTBTGATTGGYY
Misc
Kulakovskiy et al.(2013)
FOXI1_HUMAN.H11MO.0.B
0.669
0.581
Foxi1
M09109_2.00
Mus musculus
RRCCAATCAVAD
HTBTGATTGGYY
Misc
Kulakovskiy et al.(2013)
FOXI1_MOUSE.H11MO.0.B
0.669
0.581
FOXI1
M10556_2.00
Homo sapiens
HAWAYAAAYAHVH
DBDTRTTTRTWTD
Transfac
Matys et al.(2006)
V$HFH3_01
0.669
0.581
FOXI1
M04828_2.00
Homo sapiens
NWWVHRTAAACAH
DTGTTTAYDBWWN
SELEX
Yin et al.(2017)
FOXI1_eDBD_Methyl-HT-SELEX
0.669
0.581
FOXI1
M04830_2.00
Homo sapiens
AAYRTAAACAAW
WTTGTTTAYRTT
SELEX
Yin et al.(2017)
FOXI1_FL_Methyl-HT-SELEX
0.669
0.581
For this family, TFs with SR scores >
0.664
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
RO3T_04418
Forkhead
71
163
KPPYSYATLIAHAILSSKDGRLTLSDIYQWISEVYPYYKKGVKGWQNSIRHNLSLNKKWFVKLDRRPTQAHPGKGGYWTLRPMTEKLFVENLT
Links
Other
Forkhead
family TFs
Other
Rhizopus oryzae
TFs
430 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CIMG_04025
Coccidioides immitis
CIMG_04025
I
MCYG_01140
Microsporum canis
MCYG_01140
I
SNOG_05002
Stagonospora nodorum
SNOG_05002
I
VDBG_06048
Verticillium albo atrum
VDBG_06048
I
A1O3_09941
Capronia epimyces
A1O3_09941
I
A1O5_05402
Cladophialophora psammophila
A1O5_05402
I
A1O7_06547
Cladophialophora yegresii
A1O7_06547
I
A1O9_10759
Exophiala aquamarina
A1O9_10759
I
ACRE_066120
Acremonium chrysogenum
ACRE_066120
I
AOL_s00110g91
Arthrobotrys oligospora
AOL_s00110g91
I
ARB_00172
Arthroderma benhamiae
ARB_00172
I
AUEXF2481DRAFT_24650
Aureobasidium subglaciale
AUEXF2481DRAFT_24650
I
BAUCODRAFT_130739
Baudoinia compniacensis
BAUCODRAFT_130739
I
BBA_06961
Beauveria bassiana
BBA_06961
I
Bcin01g08230
Botrytis cinerea
Bcin01g08230
I
BDDG_08511
Blastomyces dermatitidis
BDDG_08511
I
BGHDH14_bgh02089
Blumeria graminis
BGHDH14_bgh02089
I
ACLA_027670
Aspergillus clavatus
CADACLAG00001684
I
CADAFLAG00009850
Aspergillus flavus
CADAFLAG00009850
I
AFUA_1G06900
Aspergillus fumigatus
CADAFUAG00008684
I
CADANGAG00014230
Aspergillus niger
CADANGAG00014230
I
ANIA_05726
Aspergillus nidulans
CADANIAG00003336
I
CADAORAG00000448
Aspergillus oryzae
CADAORAG00000448
I
ATEG_02928
Aspergillus terreus
CADATEAG00010284
I
NFIA_017790
Neosartorya fischeri
CADNFIAG00001566
I
CCM_06653
Cordyceps militaris
CCM_06653
I
CFIO01_13401
Colletotrichum fioriniae
CFIO01_13401
I
CGGC5_2430
Colletotrichum gloeosporioides
CGGC5_2430
I
CHGG_05033
Chaetomium globosum
CHGG_05033
I
CMQ_7368
Grosmannia clavigera
CMQ_7368
I
Cob_01618
Colletotrichum orbiculare
Cob_01618
I
COCC4DRAFT_144568
Bipolaris maydis
COCC4DRAFT_144568
I
COCCADRAFT_108895
Bipolaris zeicola
COCCADRAFT_108895
I
COCMIDRAFT_82997
Bipolaris oryzae
COCMIDRAFT_82997
I
COCSADRAFT_249666
Bipolaris sorokiniana
COCSADRAFT_249666
I
COCVIDRAFT_98457
Bipolaris victoriae
COCVIDRAFT_98457
I
CPC735_003570
Coccidioides posadasii
CPC735_003570
I
CPUR_01775
Claviceps purpurea
CPUR_01775
I
CSUB01_01407
Colletotrichum sublineola
CSUB01_01407
I
CTHT_0031440
Chaetomium thermophilum
CTHT_0031440
I
DOTSEDRAFT_152208
Dothistroma septosporum
DOTSEDRAFT_152208
I
DRE_04887
Drechslerella stenobrocha
DRE_04887
I
EPUS_01490
Endocarpon pusillum
EPUS_01490
I
EURHEDRAFT_446038
Aspergillus ruber
EURHEDRAFT_446038
I
F503_02827
Ophiostoma piceae uamh
F503_02827
I
FFUJ_01538
Fusarium fujikuroi
FFUJ_01538
I
FGRRES_01341
Fusarium graminearum
FGRRES_01341
I
FOXG_00040
Fusarium oxysporum
FOXG_00040
I
FPSE_03379
Fusarium pseudograminearum
FPSE_03379
I
FVEG_01476
Fusarium verticillioides
FVEG_01476
I
G647_05990
Cladophialophora carrionii
G647_05990
I
GGTG_09945
Gaeumannomyces graminis
GGTG_09945
I
GLRG_03936
Colletotrichum graminicola
GLRG_03936
I
GMDG_07025
Pseudogymnoascus destructans
GMDG_07025
I
GSTUM_00003205001
Tuber melanosporum
GSTUM_00003205001
I
H072_3701
Dactylellina haptotyla
H072_3701
I
H101_05158
Trichophyton interdigitale
H101_05158
I
H102_01127
Trichophyton rubrum
H102_01127
I
H105_01140
Trichophyton soudanense
H105_01140
I
HCBG_02406
Histoplasma capsulatum
HCBG_02406
I
HMPREF1120_03777
Exophiala dermatitidis
HMPREF1120_03777
I
HMPREF1541_01496
Cyphellophora europaea
HMPREF1541_01496
I
HMPREF1624_02702
Sporothrix schenckii
HMPREF1624_02702
I
LEMA_P046340.1
Leptosphaeria maculans
LEMA_P046340.1
I
M437DRAFT_48815
Aureobasidium melanogenum
M437DRAFT_48815
I
M438DRAFT_134375
Aureobasidium pullulans
M438DRAFT_134375
I
MAC_04600
Metarhizium acridum
MAC_04600
I
MAJ_04587
Metarhizium majus
MAJ_04587
I
MAM_03690
Metarhizium album
MAM_03690
I
MANI_013553
Metarhizium anisopliae
MANI_013553
I
MAPG_02863
Magnaporthe poae
MAPG_02863
I
MBM_06247
Marssonina brunnea
MBM_06247
I
MBR_06001
Metarhizium brunneum
MBR_06001
I
MCYG_01140
Arthroderma otae
MCYG_01140
I
MGG_05133
Magnaporthe oryzae
MGG_05133
I
MGU_06476
Metarhizium guizhouense
MGU_06476
I
MGYG_01691
Microsporum gypseum
MGYG_01691
I
MPH_00854
Macrophomina phaseolina
MPH_00854
I
MYCTH_59287
Myceliophthora thermophila
MYCTH_59287
I
NechaG65383
Fusarium solani
NechaG65383
I
NEUTE1DRAFT_128338
Neurospora tetrasperma
NEUTE1DRAFT_128338
I
OCS_06574
Ophiocordyceps sinensis
OCS_06574
I
OIDMADRAFT_26712
Oidiodendron maius
OIDMADRAFT_26712
I
PAAG_07831
Paracoccidioides sp lutzii
PAAG_07831
I
PABG_07760
Paracoccidioides brasiliensis
PABG_07760
I
PCH_Pc13g03120
Penicillium rubens
PCH_Pc13g03120
I
PDE_02584
Penicillium oxalicum
PDE_02584
I
PDIP_68900
Penicillium digitatum
PDIP_68900
I
PEX1_101950
Penicillium expansum
PEX1_101950
I
PFICI_00980
Pestalotiopsis fici
PFICI_00980
I
PITC_089390
Penicillium italicum
PITC_089390
I
PMAA_026570
Talaromyces marneffei
PMAA_026570
I
PODANS_3_1720
Podospora anserina
PODANS_3_1720
I
PTRG_04116
Pyrenophora triticirepentis
PTRG_04116
I
PTT_19703
Pyrenophora teres
PTT_19703
I
PV04_06949
Capronia semiimmersa
PV04_06949
I
PV05_08266
Exophiala xenobiotica
PV05_08266
I
PV06_01972
Exophiala oligosperma
PV06_01972
I
PV07_03056
Cladophialophora immunda
PV07_03056
I
PV08_02892
Exophiala spinifera
PV08_02892
I
PV09_03810
Verruconis gallopava
PV09_03810
I
PV10_08344
Exophiala mesophila
PV10_08344
I
PV11_06352
Exophiala sideris
PV11_06352
I
PVAR5_1858
Byssochlamys spectabilis
PVAR5_1858
I
S40285_06160
Stachybotrys chlorohalonata
S40285_06160
I
S40288_04088
Stachybotrys chartarum
S40288_04088
I
SAPIO_CDS3076
Scedosporium apiospermum
SAPIO_CDS3076
I
SBOR_1289
Sclerotinia borealis
SBOR_1289
I
SEPMUDRAFT_152049
Sphaerulina musiva
SEPMUDRAFT_152049
I
SETTUDRAFT_132094
Setosphaeria turcica
SETTUDRAFT_132094
I
SMAC_08565
Sordaria macrospora
SMAC_08565
I
SNOG_05002
Phaeosphaeria nodorum
SNOG_05002
I
SPBR_02428
Sporothrix brasiliensis
SPBR_02428
I
SS1G_04676
Sclerotinia sclerotiorum
SS1G_04676
I
TEQG_02078
Trichophyton equinum
TEQG_02078
I
TESG_07609
Trichophyton tonsurans
TESG_07609
I
THITE_2116088
Thielavia terrestris
THITE_2116088
I
TRIATDRAFT_173231
Trichoderma atroviride
TRIATDRAFT_173231
I
TRIREDRAFT_36391
Trichoderma reesei
TRIREDRAFT_36391
I
TRIVIDRAFT_232155
Trichoderma virens
TRIVIDRAFT_232155
I
TRV_07311
Trichophyton verrucosum
TRV_07311
I
TSTA_072300
Talaromyces stipitatus
TSTA_072300
I
U727_0043368031
Penicillium solitum
U727_0043368031
I
UCREL1_10204
Eutypa lata
UCREL1_10204
I
UCRNP2_5327
Neofusicoccum parvum
UCRNP2_5327
I
UREG_01940
Uncinocarpus reesii
UREG_01940
I
UV8b_2987
Ustilaginoidea virens
UV8b_2987
I
V499_02401
Pseudogymnoascus pannorum
V499_02401
I
VDAG_03208
Verticillium dahliae
VDAG_03208
I
VDBG_06048
Verticillium alfalfae
VDBG_06048
I
VHEMI08976
Torrubiella hemipterigena
VHEMI08976
I
W97_08085
Coniosporium apollinis
W97_08085
I
W97_09244
Coniosporium apollinis
W97_09244
I
X797_005757
Metarhizium robertsii
X797_005757
I
Z517_05592
Fonsecaea pedrosoi
Z517_05592
I
Z518_05937
Rhinocladiella mackenziei
Z518_05937
I
Z519_08276
Cladophialophora bantiana
Z519_08276
I
AAE_estExt_fgenesh1_pg.C_chr_120283
Mycosphaerella graminicola
AAE_estExt_fgenesh1_pg.C_chr_120283
I
estExt_Genewise1Plus.C_130195
Cochliobolus heterostrophus C5
estExt_Genewise1Plus.C_130195
I
estExt_Genewise1Plus.C_31872
Neurospora discreta
estExt_Genewise1Plus.C_31872
I
estExt_Genewise1Plus.C_sca_1_chr1_3_00050
Nectria haematococca
estExt_Genewise1Plus.C_sca_1_chr1_3_00050
I
AB03945.1
Alternaria brassicicola
AB03945.1
I
estExt_fgenesh1_pg.C_30488
Cryphonectria parasitica
estExt_fgenesh1_pg.C_30488
I
fgenesh1_pm.00129_#_72
Aspergillus carbonarius
fgenesh1_pm.00129_#_72
I
Pc13g03120
Penicillium chrysogenum
Pc13g03120
I
PMAA_026570
Penicillium marneffei
PMAA_026570
I