foxj1b (Danio rerio)
Forkhead

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00250 (Forkhead) IPR001766 ENSDARG00000088290 T185549_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Foxj1
M00161_2.00 		Mus musculus
NNHAAACAAANN
NNTTTGTTTDNN		 PBM
Badis et al.(2009)
Foxj1_3125 		0.826 0.826
FOXJ1
M10547_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HFH4_01 		0.826 0.826
FOXJ3
M03046_2.00 		Homo sapiens
RTAAAVAA
TTBTTTAY		 SELEX
Jolma et al.(2013)
FOXJ3_1 		0.670 0.616
FOXJ3
M03047_2.00 		Homo sapiens
GTAAACARTMAACA
TGTTKAYTGTTTAC		 SELEX
Jolma et al.(2013)
FOXJ3_2 		0.670 0.616
FOXJ3
M03048_2.00 		Homo sapiens
GTAAACATAAACA
TGTTTATGTTTAC		 SELEX
Jolma et al.(2013)
FOXJ3_3 		0.670 0.616
FOXJ3
M02736_2.00 		Homo sapiens
AAACAATAAACA
TGTTTATTGTTT		 SELEX
Jolma et al.(2010)
FOXJ3_dimer 		0.670 0.616
FOXJ3
M02737_2.00 		Homo sapiens
RTAAACAW
WTGTTTAY		 SELEX
Jolma et al.(2010)
FOXJ3_monomer 		0.670 0.616
FOXJ3
M04859_2.00 		Homo sapiens
DYGTMAACAH
DTGTTKACRH		 SELEX
Yin et al.(2017)
FOXJ3_eDBD_HT-SELEX 		0.670 0.616
FOXJ3
M09098_2.00 		Homo sapiens
WAAMMATAAACAN
NTGTTTATKKTTW		 Misc
Kulakovskiy et al.(2013)
FOXJ3_HUMAN.H11MO.0.A 		0.670 0.616
FOXJ3
M04860_2.00 		Homo sapiens
RYGTMAACAH
DTGTTKACRY		 SELEX
Yin et al.(2017)
FOXJ3_eDBD_Methyl-HT-SELEX 		0.670 0.616
Foxj3
M00160_2.00 		Mus musculus
NRTAAACAHN
NDTGTTTAYN		 PBM
Badis et al.(2009)
Foxj3_0982 		0.669 0.616
Foxj3
M01981_2.00 		Mus musculus
VNHHAYANN
NNTRTDDNB		 PBM
Weirauch et al.(2014)
pTH6591 		0.669 0.616
Foxj3
M03055_2.00 		Mus musculus
ACGGACACAAT
ATTGTGTCCGT		 SELEX
Jolma et al.(2013)
Foxj3_1 		0.669 0.616
Foxj3
M03056_2.00 		Mus musculus
GTAAACARTMAACA
TGTTKAYTGTTTAC		 SELEX
Jolma et al.(2013)
Foxj3_2 		0.669 0.616
Foxj3
M03057_2.00 		Mus musculus
RTAAACAW
WTGTTTAY		 SELEX
Jolma et al.(2013)
Foxj3_3 		0.669 0.616
Foxj3
M03058_2.00 		Mus musculus
RTAAACAWAAACA
TGTTTWTGTTTAY		 SELEX
Jolma et al.(2013)
Foxj3_4 		0.669 0.616
Foxj3
M09102_2.00 		Mus musculus
WAAMMATAAACAN
NTGTTTATKKTTW		 Misc
Kulakovskiy et al.(2013)
FOXJ3_MOUSE.H11MO.0.A 		0.669 0.616
SPU_007644
M01987_2.00 		Strongylocentrotus purpuratus
NNHHAYDNN
NNHRTDDNN		 PBM
Weirauch et al.(2014)
pTH6497 		0.667 0.651
For this family, TFs with SR scores > 0.664 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000107064 Forkhead 139 228
ENSDARP00000127381 Forkhead 139 184

Links

Other Forkhead family TFs
Other Danio rerio TFs

195 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI1G63680 Brachypodium distachyon BRADI1G63680 N 0.000
EMIHUDRAFT_217694 Emiliania huxleyi EMIHUDRAFT_217694 N 0.000
LPERR08G06500 Leersia perrieri LPERR08G06500 N 0.000
MTR_4g088065 Medicago truncatula MTR_4g088065 N 0.000
OPUNC01G25730 Oryza punctata OPUNC01G25730 N 0.000
Traes_4BL_085791CB2 Triticum aestivum Traes_4BL_085791CB2 N 0.000
Cla017771 Citrullus lanatus Cla017771 N 0.000
cassava41170.m1 Manihot esculenta cassava41170.m1 N 0.000
fgenesh1_pg.C_scaffold_13000344 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_13000344 N 0.000
mgf013558m Mimulus guttatus mgf013558m N 0.000
Lus10013960.g Linum usitatissimum Lus10013960.g N 0.000
Lus10018726.g Linum usitatissimum Lus10018726.g N 0.000
Pavir.J05483 Panicum virgatum Pavir.J05483 N 0.000