CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Sjc_0002220 *(Schistosoma japonicum)* Forkhead
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00250 (Forkhead)	IPR001766	Sjc_0002220	T189589_2.00	Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Foxj3 M00160_2.00	Mus musculus	NRTAAACAHN	NDTGTTTAYN	PBM Badis et al.(2009) Foxj3_0982	0.753	0.744
Foxj3 M01981_2.00	Mus musculus	VNHHAYANN	NNTRTDDNB	PBM Weirauch et al.(2014) pTH6591	0.753	0.744
Foxj3 M03055_2.00	Mus musculus	ACGGACACAAT	ATTGTGTCCGT	SELEX Jolma et al.(2013) Foxj3_1	0.753	0.744
Foxj3 M03056_2.00	Mus musculus	GTAAACARTMAACA	TGTTKAYTGTTTAC	SELEX Jolma et al.(2013) Foxj3_2	0.753	0.744
Foxj3 M03057_2.00	Mus musculus	RTAAACAW	WTGTTTAY	SELEX Jolma et al.(2013) Foxj3_3	0.753	0.744
Foxj3 M03058_2.00	Mus musculus	RTAAACAWAAACA	TGTTTWTGTTTAY	SELEX Jolma et al.(2013) Foxj3_4	0.753	0.744
Foxj3 M09102_2.00	Mus musculus	WAAMMATAAACAN	NTGTTTATKKTTW	Misc Kulakovskiy et al.(2013) FOXJ3_MOUSE.H11MO.0.A	0.753	0.744
FOXJ3 M03046_2.00	Homo sapiens	RTAAAVAA	TTBTTTAY	SELEX Jolma et al.(2013) FOXJ3_1	0.753	0.744
FOXJ3 M03047_2.00	Homo sapiens	GTAAACARTMAACA	TGTTKAYTGTTTAC	SELEX Jolma et al.(2013) FOXJ3_2	0.753	0.744
FOXJ3 M03048_2.00	Homo sapiens	GTAAACATAAACA	TGTTTATGTTTAC	SELEX Jolma et al.(2013) FOXJ3_3	0.753	0.744
FOXJ3 M02736_2.00	Homo sapiens	AAACAATAAACA	TGTTTATTGTTT	SELEX Jolma et al.(2010) FOXJ3_dimer	0.753	0.744
FOXJ3 M02737_2.00	Homo sapiens	RTAAACAW	WTGTTTAY	SELEX Jolma et al.(2010) FOXJ3_monomer	0.753	0.744
FOXJ3 M04859_2.00	Homo sapiens	DYGTMAACAH	DTGTTKACRH	SELEX Yin et al.(2017) FOXJ3_eDBD_HT-SELEX	0.753	0.744
FOXJ3 M09098_2.00	Homo sapiens	WAAMMATAAACAN	NTGTTTATKKTTW	Misc Kulakovskiy et al.(2013) FOXJ3_HUMAN.H11MO.0.A	0.753	0.744
FOXJ3 M04860_2.00	Homo sapiens	RYGTMAACAH	DTGTTKACRY	SELEX Yin et al.(2017) FOXJ3_eDBD_Methyl-HT-SELEX	0.753	0.744
SPU_007644 M01987_2.00	Strongylocentrotus purpuratus	NNHHAYDNN	NNHRTDDNN	PBM Weirauch et al.(2014) pTH6497	0.742	0.733
Foxj2 M01980_2.00	Mus musculus	RTAAACAN	NTGTTTAY	PBM Weirauch et al.(2014) pTH6638	0.733	0.698
Foxj2 M00790_2.00	Mus musculus	VHMAAYANN	NNTRTTKDB	PBM Weirauch et al.(2013) pTH3043	0.725	0.686
FOXJ2 M03016_2.00	Homo sapiens	GTAAACARTMAACA	TGTTKAYTGTTTAC	SELEX Jolma et al.(2013) FOXJ2_1	0.725	0.686
FOXJ2 M03017_2.00	Homo sapiens	RTAAACAH	DTGTTTAY	SELEX Jolma et al.(2013) FOXJ2_2	0.725	0.686
FOXJ2 M03018_2.00	Homo sapiens	GTAAACAWMAACA	TGTTKWTGTTTAC	SELEX Jolma et al.(2013) FOXJ2_3	0.725	0.686
FOXJ2 M04809_2.00	Homo sapiens	NTRTTTACAAYANN	NNTRTTGTAAAYAN	SELEX Yin et al.(2017) FOXJ2_eDBD_HT-SELEX	0.725	0.686
FOXJ2 M09084_2.00	Homo sapiens	WARAYAAAYA	TRTTTRTYTW	Misc Kulakovskiy et al.(2013) FOXJ2_HUMAN.H11MO.0.C	0.725	0.686
Foxj2 M09100_2.00	Mus musculus	WARAYAAAYA	TRTTTRTYTW	Misc Kulakovskiy et al.(2013) FOXJ2_MOUSE.H11MO.0.C	0.725	0.686
FOXJ2 M10527_2.00	Homo sapiens	HHNHMRAYAAAYANHNND	HNNDNTRTTTRTYKDNDD	Transfac Matys et al.(2006) V$FOXJ2_01	0.725	0.686
FOXJ2 M10528_2.00	Homo sapiens	VYMAYAATATTTKN	NMAAATATTRTKRB	Transfac Matys et al.(2006) V$FOXJ2_02	0.725	0.686
FOXJ2 M04810_2.00	Homo sapiens	NTRTTTACAAYANN	NNTRTTGTAAAYAN	SELEX Yin et al.(2017) FOXJ2_eDBD_Methyl-HT-SELEX	0.725	0.686
SPU_025010 M01988_2.00	Strongylocentrotus purpuratus	NNVNHHAYAN	NTRTDDNBNN	PBM Weirauch et al.(2014) pTH6641	0.678	0.558
Foxk1 M00163_2.00	Mus musculus	RWMAACAA	TTGTTKWY	PBM Badis et al.(2009) Foxk1_2323	0.670	0.535
Foxk1 M03061_2.00	Mus musculus	CGGACACAATC	GATTGTGTCCG	SELEX Jolma et al.(2013) Foxk1_1	0.670	0.535
Foxk1 M03062_2.00	Mus musculus	RTAAACA	TGTTTAY	SELEX Jolma et al.(2013) Foxk1_2	0.670	0.535
Foxk1 M09113_2.00	Mus musculus	NNGDMAACAVV	BBTGTTKHCNN	Misc Kulakovskiy et al.(2013) FOXK1_MOUSE.H11MO.0.A	0.670	0.535
FOXK1 M01977_2.00	Homo sapiens	NNRWMMAYAN	NTRTKKWYNN	PBM Weirauch et al.(2014) pTH6108	0.670	0.523
FOXK1 M03025_2.00	Homo sapiens	CGGACACAAT	ATTGTGTCCG	SELEX Jolma et al.(2013) FOXK1_1	0.670	0.523
FOXK1 M04825_2.00	Homo sapiens	NDNRTMAAYAN	NTRTTKAYNHN	SELEX Yin et al.(2017) FOXK1_eDBD_HT-SELEX	0.670	0.523
FOXK1 M08120_2.00	Homo sapiens	NNNGTAAACANVNN	NNBNTGTTTACNNN	ChIP-seq Mathelier et al.(2014) MA0852.2	0.670	0.523
FOXK1 M09094_2.00	Homo sapiens	VNDRDAAACA	TGTTTHYHNB	Misc Kulakovskiy et al.(2013) FOXK1_HUMAN.H11MO.0.A	0.670	0.523
FOXK1 M04826_2.00	Homo sapiens	NWYRYAAWYAD	HTRWTTRYRWN	SELEX Yin et al.(2017) FOXK1_eDBD_Methyl-HT-SELEX	0.670	0.523
HCM1 M00044_2.00	Saccharomyces cerevisiae	NRWHAACAN	NTGTTDWYN	PBM Badis et al.(2008) HCM1_2157	0.670	0.488
HCM1 M07473_2.00	Saccharomyces cerevisiae	VWMAACAH	DTGTTKWB	PBM, CSA and or DIP-chip Mathelier et al.(2014) MA0317.1	0.670	0.488
HCM1 M08554_2.00	Saccharomyces cerevisiae	VWMAACAH	DTGTTKWB	Misc DeBoer et al.(2011) YCR065W_570	0.670	0.488
FOXK2 M08118_2.00	Homo sapiens	NNRTAAACANN	NNTGTTTAYNN	ChIP-seq Mathelier et al.(2014) MA1103.1	0.666	0.535
FOXI1 M03026_2.00	Homo sapiens	GTAAACA	TGTTTAC	SELEX Jolma et al.(2013) FOXI1_1	0.666	0.535
FOXI1 M03027_2.00	Homo sapiens	RTGTKTACGGTAAACAA	TTGTTTACCGTAMACAY	SELEX Jolma et al.(2013) FOXI1_2	0.666	0.535
FOXI1 M04827_2.00	Homo sapiens	NNNNNRTMAACAN	NTGTTKAYNNNNN	SELEX Yin et al.(2017) FOXI1_eDBD_HT-SELEX	0.666	0.535
FOXI1 M04829_2.00	Homo sapiens	AAYGTAAACAMW	WKTGTTTACRTT	SELEX Yin et al.(2017) FOXI1_FL_HT-SELEX	0.666	0.535
FOXI1 M09095_2.00	Homo sapiens	RRCCAATCAVAD	HTBTGATTGGYY	Misc Kulakovskiy et al.(2013) FOXI1_HUMAN.H11MO.0.B	0.666	0.535
FOXI1 M10556_2.00	Homo sapiens	HAWAYAAAYAHVH	DBDTRTTTRTWTD	Transfac Matys et al.(2006) V$HFH3_01	0.666	0.535
FOXI1 M04828_2.00	Homo sapiens	NWWVHRTAAACAH	DTGTTTAYDBWWN	SELEX Yin et al.(2017) FOXI1_eDBD_Methyl-HT-SELEX	0.666	0.535
FOXI1 M04830_2.00	Homo sapiens	AAYRTAAACAAW	WTTGTTTAYRTT	SELEX Yin et al.(2017) FOXI1_FL_Methyl-HT-SELEX	0.666	0.535
Foxi1 M09109_2.00	Mus musculus	RRCCAATCAVAD	HTBTGATTGGYY	Misc Kulakovskiy et al.(2013) FOXI1_MOUSE.H11MO.0.B	0.666	0.523
For this family, TFs with SR scores > 0.664* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
CPRT0000000208	Forkhead	63	150	KPPYSYASLITCAIQSTVEKKMTLSEIYQWICDNFPYYCEAGSGWKNSIRHNLSLNKSFTKIPRSRDEPGKGSYWCLSNQCDDQEYMP

Links
Other Forkhead family TFs
Other *Schistosoma japonicum* TFs

633 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
THITE_2124588	Thielavia terrestris	THITE_2124588	I	0.000
GGTG_04497	Gaeumannomyces graminis	GGTG_04497	I	0.000
MAPG_08463	Magnaporthe poae	MAPG_08463	I	0.000
MYCTH_2312830	Myceliophthora thermophila	MYCTH_2312830	I	0.000
A1O1_06994	Capronia coronata	A1O1_06994	I	0.000
PV04_02219	Capronia semiimmersa	PV04_02219	N	0.000
Z519_10905	Cladophialophora bantiana	Z519_10905	N	0.000
Z518_02653	Rhinocladiella mackenziei	Z518_02653	N	0.000
Z517_00100	Fonsecaea pedrosoi	Z517_00100	N	0.000
PV10_01083	Exophiala mesophila	PV10_01083	N	0.000
PV08_03167	Exophiala spinifera	PV08_03167	N	0.000
PV07_02500	Cladophialophora immunda	PV07_02500	N	0.000
PV06_04873	Exophiala oligosperma	PV06_04873	N	0.000
PV05_07310	Exophiala xenobiotica	PV05_07310	N	0.000
HMPREF1541_07161	Cyphellophora europaea	HMPREF1541_07161	N	0.000
G647_09835	Cladophialophora carrionii	G647_09835	N	0.000
A1O7_02024	Cladophialophora yegresii	A1O7_02024	N	0.000
A1O5_10239	Cladophialophora psammophila	A1O5_10239	N	0.000
A1O3_04352	Capronia epimyces	A1O3_04352	N	0.000

Sjc_0002220 (Schistosoma japonicum) Forkhead

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

633 Related TFs

Sjc_0002220 **(Schistosoma japonicum)
Forkhead**