CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

grn *(Drosophila melanogaster)* GATA
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00320 (GATA)	IPR000679	FBgn0001138	T193199_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
grn M03754_2.00	Drosophila melanogaster	HGATAASV	BSTTATCD	SELEX Nitta et al.(2015) grn_1	(Direct)	(Direct)
grn M03755_2.00	Drosophila melanogaster	NHGATAAGNNNCTTATCDN	NHGATAAGNNNCTTATCDN	SELEX Nitta et al.(2015) grn_2	(Direct)	(Direct)
grn M03756_2.00	Drosophila melanogaster	NHGATAACNNNGTTATCDN	NHGATAACNNNGTTATCDN	SELEX Nitta et al.(2015) grn_3	(Direct)	(Direct)
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
GATA1 M02738_2.00	Homo sapiens	GATWASMH	DKSTWATC	SELEX Jolma et al.(2010) GATA1_dimer	0.859	0.871
GATA1 M02739_2.00	Homo sapiens	HGATAA	TTATCD	SELEX Jolma et al.(2010) GATA1_monomer	0.859	0.871
GATA1 M04861_2.00	Homo sapiens	GATAAKDNHMTTATC	GATAAKDNHMTTATC	SELEX Yin et al.(2017) GATA1_eDBD_HT-SELEX	0.859	0.871
GATA1 M07963_2.00	Homo sapiens	NSWGATAASVN	NBSTTATCWSN	ChIP-seq Gerstein et al.(2012) K562b_GATA1_UCD	0.859	0.871
GATA1 M07964_2.00	Homo sapiens	NNKNNNNNNNSWGATAAV	BTTATCWSNNNNNNNMNN	ChIP-seq Gerstein et al.(2012) PBDE_GATA1_UCD	0.859	0.871
GATA1 M08202_2.00	Homo sapiens	NBKBNNNNNNSWGATAASVN	NBSTTATCWSNNNNNNVMVN	ChIP-seq Contrino et al.(2012) Mv73	0.859	0.871
GATA1 M08203_2.00	Homo sapiens	WGATNNNATC	GATNNNATCW	ChIP-seq Contrino et al.(2012) Mv75	0.859	0.871
GATA1 M09115_2.00	Homo sapiens	NBKBNNNNNNVWGATAAVV	BBTTATCWBNNNNNNVMVN	Misc Kulakovskiy et al.(2013) GATA1_HUMAN.H11MO.0.A	0.859	0.871
GATA1 M09549_2.00	Homo sapiens	SWGATAAGVV	BBCTTATCWS	Misc Heinz et al.(2010) K562-GATA1_GSE18829	0.859	0.871
GATA1 M10577_2.00	Homo sapiens	SVNGATDBBN	NVVHATCNBS	Transfac Matys et al.(2006) V$GATA1_01	0.859	0.871
GATA1 M10578_2.00	Homo sapiens	NHVNHGATAVKVBN	NVBMBTATCDNBDN	Transfac Matys et al.(2006) V$GATA1_02	0.859	0.871
GATA1 M10579_2.00	Homo sapiens	RNSNDGATTRBNRN	NYNVYAATCHNSNY	Transfac Matys et al.(2006) V$GATA1_03	0.859	0.871
GATA1 M10580_2.00	Homo sapiens	DNVWGATARVNVN	NBNBYTATCWBNH	Transfac Matys et al.(2006) V$GATA1_04	0.859	0.871
GATA1 M10581_2.00	Homo sapiens	VMHGATAAVM	KBTTATCDKB	Transfac Matys et al.(2006) V$GATA1_05	0.859	0.871
GATA1 M10582_2.00	Homo sapiens	MNAGATAAVR	YBTTATCTNK	Transfac Matys et al.(2006) V$GATA1_06	0.859	0.871
GATA1 M10583_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$GATA1_10	0.859	0.871
GATA1 M10584_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$GATA1_Q6	0.859	0.871
GATA1 M04862_2.00	Homo sapiens	GATAABNNNVTTATC	GATAABNNNVTTATC	SELEX Yin et al.(2017) GATA1_eDBD_Methyl-HT-SELEX	0.859	0.871
Gata3 M00166_2.00	Mus musculus	NNNHGATHNN	NNDATCDNNN	PBM Badis et al.(2009) Gata3_1024	0.854	0.929
GATA3 M03063_2.00	Homo sapiens	HGATARVV	BBYTATCD	SELEX Jolma et al.(2013) GATA3_1	0.854	0.929
GATA3 M03064_2.00	Homo sapiens	HGATAAVV	BBTTATCD	SELEX Jolma et al.(2013) GATA3_2	0.854	0.929
GATA2 M04879_2.00	Homo sapiens	VHGATAHSV	BSDTATCDB	SELEX Yin et al.(2017) GATA2_eDBD_HT-SELEX	0.854	0.929
GATA3 M04863_2.00	Homo sapiens	HGATAASRATCW	WGATYSTTATCD	SELEX Yin et al.(2017) GATA3_FL_HT-SELEX_1	0.854	0.929
GATA3 M04864_2.00	Homo sapiens	HGATAASATCD	HGATSTTATCD	SELEX Yin et al.(2017) GATA3_FL_HT-SELEX_2	0.854	0.929
Gata3 M05867_2.00	Mus musculus	GATAAN	NTTATC	SMiLE-seq Isakova et al.(2017) GATA3	0.854	0.929
GATA2 M08125_2.00	Homo sapiens	NNAGATAAGNN	NNCTTATCTNN	ChIP-seq Mathelier et al.(2014) MA0036.3	0.854	0.929
GATA2 M07966_2.00	Homo sapiens	NVWGATAAVVN	NBBTTATCWBN	ChIP-seq Gerstein et al.(2012) HUVEC_GATA2_UCD	0.854	0.929
GATA2 M07967_2.00	Homo sapiens	BKNNNNNNNSWGATAASV	BSTTATCWSNNNNNNNMV	ChIP-seq Gerstein et al.(2012) K562b_GATA2_UCD	0.854	0.929
GATA2 M07968_2.00	Homo sapiens	NNKNNNNNNNVWGATAAV	BTTATCWBNNNNNNNMNN	ChIP-seq Gerstein et al.(2012) K562_GATA2_HudsonAlpha	0.854	0.929
GATA2 M07969_2.00	Homo sapiens	NVWGATAAVV	BBTTATCWBN	ChIP-seq Gerstein et al.(2012) K562_GATA2_UChicago	0.854	0.929
GATA2 M07970_2.00	Homo sapiens	VWGATARVVN	NBBYTATCWB	ChIP-seq Gerstein et al.(2012) SH-SY5Y_GATA2_UCD	0.854	0.929
GATA3 M07965_2.00	Homo sapiens	NWGATWRNVATCWSN	NSWGATBNYWATCWN	ChIP-seq Gerstein et al.(2012) T-47D_GATA3_HudsonAlpha	0.854	0.929
GATA2 M09119_2.00	Homo sapiens	NKKNNNNNNDVAGATAASV	BSTTATCTBHNNNNNNMMN	Misc Kulakovskiy et al.(2013) GATA2_HUMAN.H11MO.0.A	0.854	0.929
GATA3 M09116_2.00	Homo sapiens	DVAGATAAVRD	HYBTTATCTBH	Misc Kulakovskiy et al.(2013) GATA3_HUMAN.H11MO.0.A	0.854	0.929
Gata2 M09121_2.00	Mus musculus	DVAGATAASVN	NBSTTATCTBH	Misc Kulakovskiy et al.(2013) GATA2_MOUSE.H11MO.0.A	0.854	0.929
Gata3 M09122_2.00	Mus musculus	NVWGATAAVVDBH	DVHBBTTATCWBN	Misc Kulakovskiy et al.(2013) GATA3_MOUSE.H11MO.0.A	0.854	0.929
GATA2 M09550_2.00	Homo sapiens	VWGATAAGVN	NBCTTATCWB	Misc Heinz et al.(2010) K562-GATA2_GSE18829	0.854	0.929
Gata3 M09551_2.00	Mus musculus	AGATBNNNAGATARV	BYTATCTNNNVATCT	Misc Heinz et al.(2010) iTreg-Gata3_GSE20898_1	0.854	0.929
Gata3 M09552_2.00	Mus musculus	AGATBDNNNNDSWGATWRNN	NNYWATCWSHNNNNHVATCT	Misc Heinz et al.(2010) iTreg-Gata3_GSE20898_2	0.854	0.929
Gata3 M09553_2.00	Mus musculus	NNNNNNWGATNDNATCWNNN	NNNWGATNHNATCWNNNNNN	Misc Heinz et al.(2010) iTreg-Gata3_GSE20898_3	0.854	0.929
Gata3 M09554_2.00	Mus musculus	NWGATNNNNATCWNN	NNWGATNNNNATCWN	Misc Heinz et al.(2010) iTreg-Gata3_GSE20898_4	0.854	0.929
Gata3 M09555_2.00	Mus musculus	WGATAAVV	BBTTATCW	Misc Heinz et al.(2010) iTreg-Gata3_GSE20898_5	0.854	0.929
GATA2 M10594_2.00	Homo sapiens	BVNGATRNBN	NVNYATCNBV	Transfac Matys et al.(2006) V$GATA2_01	0.854	0.929
GATA2 M10595_2.00	Homo sapiens	NNWGATAASR	YSTTATCWNN	Transfac Matys et al.(2006) V$GATA2_02	0.854	0.929
GATA2 M10596_2.00	Homo sapiens	HSAGATAWBA	TVWTATCWSD	Transfac Matys et al.(2006) V$GATA2_03	0.854	0.929
GATA2 M10597_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$GATA2_Q5	0.854	0.929
GATA3 M10586_2.00	Homo sapiens	NNGATDRNR	YNYHATCNN	Transfac Matys et al.(2006) V$GATA3_01	0.854	0.929
GATA3 M10587_2.00	Homo sapiens	NRWGATAANA	TNTTATCWYN	Transfac Matys et al.(2006) V$GATA3_02	0.854	0.929
GATA3 M10588_2.00	Homo sapiens	ANWGATMWDA	THWKATCWNT	Transfac Matys et al.(2006) V$GATA3_03	0.854	0.929
GATA3 M10589_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$GATA3_Q4	0.854	0.929
GATA2 M04880_2.00	Homo sapiens	NHGATADSV	BSHTATCDN	SELEX Yin et al.(2017) GATA2_eDBD_Methyl-HT-SELEX	0.854	0.929
GATA3 M04865_2.00	Homo sapiens	WGATAASGATCW	WGATCSTTATCW	SELEX Yin et al.(2017) GATA3_FL_Methyl-HT-SELEX_1	0.854	0.929
GATA3 M04866_2.00	Homo sapiens	WGATAASATCW	WGATSTTATCW	SELEX Yin et al.(2017) GATA3_FL_Methyl-HT-SELEX_2	0.854	0.929
Gata1 M08127_2.00	Mus musculus	RNAGATAAGRV	BYCTTATCTNY	ChIP-seq Mathelier et al.(2014) MA0035.3	0.852	0.886
Gata1 M09124_2.00	Mus musculus	BKBNNNNNNVWGATAAVVV	BBBTTATCWBNNNNNNVMV	Misc Kulakovskiy et al.(2013) GATA1_MOUSE.H11MO.0.A	0.852	0.886
srp M03759_2.00	Drosophila melanogaster	NHGATAAVV	BBTTATCDN	SELEX Nitta et al.(2015) srp_1	0.851	0.829
srp M03760_2.00	Drosophila melanogaster	NHGATAABV	BVTTATCDN	SELEX Nitta et al.(2015) srp_2	0.851	0.829
srp M06205_2.00	Drosophila melanogaster	VTCWABCSATAV	BTAWSGVTWGAB	B1H Zhu et al.(2011) srp_FlyReg_FBgn0003507	0.851	0.829
srp M06206_2.00	Drosophila melanogaster	WGATAAGV	BCTTATCW	B1H Zhu et al.(2011) srp_SANGER_5_FBgn0003507	0.851	0.829
srp M09670_2.00	Drosophila melanogaster	KHGATARBV	BVYTATCDM	Misc Kulakovskiy et al.(2009) srp	0.851	0.829
pnr M03757_2.00	Drosophila melanogaster	NGATAAGATAASN	NSTTATCTTATCN	SELEX Nitta et al.(2015) pnr_1	0.849	0.871
pnr M03758_2.00	Drosophila melanogaster	NHGATAASV	BSTTATCDN	SELEX Nitta et al.(2015) pnr_2	0.849	0.871
pnr M06204_2.00	Drosophila melanogaster	BWGATAA	TTATCWV	B1H Zhu et al.(2011) pnr_SANGER_5_FBgn0003117	0.849	0.871
pnr M08204_2.00	Drosophila melanogaster	ANHNNBHGATAASSDNNB	VNNHSSTTATCDVNNDNT	ChIP-seq Contrino et al.(2012) Mf28	0.849	0.871
pnr M08418_2.00	Drosophila melanogaster	YATCGATWKBY	RVMWATCGATR	ChIP-chip Mathelier et al.(2014) MA0536.1	0.849	0.871
Gata4 M00799_2.00	Mus musculus	NHGATWDNN	NNHWATCDN	PBM Weirauch et al.(2013) pTH1049	0.845	0.886
GATA4 M03066_2.00	Homo sapiens	HGATAAVV	BBTTATCD	SELEX Jolma et al.(2013) GATA4_1	0.845	0.886
GATA4 M04875_2.00	Homo sapiens	NHGATAASVN	NBSTTATCDN	SELEX Yin et al.(2017) GATA4_eDBD_HT-SELEX	0.845	0.886
Gata4 M08126_2.00	Mus musculus	NDVAGATAAGR	YCTTATCTBHN	ChIP-seq Mathelier et al.(2014) MA0482.1	0.845	0.886
GATA4 M09117_2.00	Homo sapiens	NVWGATAAGR	YCTTATCWBN	Misc Kulakovskiy et al.(2013) GATA4_HUMAN.H11MO.0.A	0.845	0.886
Gata4 M09123_2.00	Mus musculus	NVWGATAAGR	YCTTATCWBN	Misc Kulakovskiy et al.(2013) GATA4_MOUSE.H11MO.0.A	0.845	0.886
Gata4 M09556_2.00	Mus musculus	NNWGATAASV	BSTTATCWNN	Misc Heinz et al.(2010) Heart-Gata4_GSE35151	0.845	0.886
GATA4 M10590_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$GATA4_Q3	0.845	0.886
GATA4 M10591_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$GATA4_Q5_01	0.845	0.886
GATA4 M04876_2.00	Homo sapiens	NWGATAASVN	NBSTTATCWN	SELEX Yin et al.(2017) GATA4_eDBD_Methyl-HT-SELEX	0.845	0.886
GATA5 M03065_2.00	Homo sapiens	HGATAAVV	BBTTATCD	SELEX Jolma et al.(2013) GATA5_1	0.845	0.843
GATA5 M04867_2.00	Homo sapiens	NHGATAASVN	NBSTTATCDN	SELEX Yin et al.(2017) GATA5_eDBD_HT-SELEX_1	0.845	0.843
GATA5 M04868_2.00	Homo sapiens	HGATAASRATCD	HGATYSTTATCD	SELEX Yin et al.(2017) GATA5_eDBD_HT-SELEX_2	0.845	0.843
GATA5 M04871_2.00	Homo sapiens	NWGATAASVN	NBSTTATCWN	SELEX Yin et al.(2017) GATA5_FL_HT-SELEX_1	0.845	0.843
GATA5 M04872_2.00	Homo sapiens	WGATAASRATCD	HGATYSTTATCW	SELEX Yin et al.(2017) GATA5_FL_HT-SELEX_2	0.845	0.843
GATA5 M04869_2.00	Homo sapiens	NWGATAASVN	NBSTTATCWN	SELEX Yin et al.(2017) GATA5_eDBD_Methyl-HT-SELEX_1	0.845	0.843
GATA5 M04870_2.00	Homo sapiens	WGATAAVRATCT	AGATYBTTATCW	SELEX Yin et al.(2017) GATA5_eDBD_Methyl-HT-SELEX_2	0.845	0.843
GATA5 M04873_2.00	Homo sapiens	NWGATAASRN	NYSTTATCWN	SELEX Yin et al.(2017) GATA5_FL_Methyl-HT-SELEX_1	0.845	0.843
GATA5 M04874_2.00	Homo sapiens	WGATAANRATCW	WGATYNTTATCW	SELEX Yin et al.(2017) GATA5_FL_Methyl-HT-SELEX_2	0.845	0.843
Gata6 M00165_2.00	Mus musculus	NHGATARN	NYTATCDN	PBM Badis et al.(2009) Gata6_3769	0.842	0.843
Gata5 M00167_2.00	Mus musculus	NNHGAWWNN	NNWWTCDNN	PBM Badis et al.(2009) Gata5_3768	0.842	0.843
GATA6 M04877_2.00	Homo sapiens	HGATAABVATCD	HGATBVTTATCD	SELEX Yin et al.(2017) GATA6_eDBD_HT-SELEX	0.842	0.843
GATA6 M08124_2.00	Homo sapiens	NNNAGATAAGRNN	NNYCTTATCTNNN	ChIP-seq Mathelier et al.(2014) MA1104.1	0.842	0.843
GATA6 M09118_2.00	Homo sapiens	NVWGATAAGRNNN	NNNYCTTATCWBN	Misc Kulakovskiy et al.(2013) GATA6_HUMAN.H11MO.0.A	0.842	0.843
Gata6 M09120_2.00	Mus musculus	NVWGATAAGV	BCTTATCWBN	Misc Kulakovskiy et al.(2013) GATA6_MOUSE.H11MO.0.A	0.842	0.843
Gata5 M10598_2.00	Mus musculus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$GATA5_Q4	0.842	0.843
GATA6 M10592_2.00	Homo sapiens	NNHGATWDNN	NNHWATCDNN	Transfac Matys et al.(2006) V$GATA6_01	0.842	0.843
GATA6 M10593_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$GATA6_Q5	0.842	0.843
GATA6 M04878_2.00	Homo sapiens	HGATAABRATCW	WGATYVTTATCD	SELEX Yin et al.(2017) GATA6_eDBD_Methyl-HT-SELEX	0.842	0.843
elt-1 M08206_2.00	Caenorhabditis elegans	GATWDNVATCT	AGATBNHWATC	ChIP-seq Contrino et al.(2012) Mw144	0.834	0.743
elt-1 M08207_2.00	Caenorhabditis elegans	TGATAASR	YSTTATCA	ChIP-seq Contrino et al.(2012) Mw145	0.834	0.743
For this family, TFs with SR scores > 0.802* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
FBpp0081304	GATA	261	295	CVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQN
FBpp0081304	GATA	321	355	CANCKTTTTTLWRRNASGEPVCNACGLYYKLHNVN
FBpp0289317	GATA	474	508	CVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQN
FBpp0289317	GATA	534	568	CANCKTTTTTLWRRNASGEPVCNACGLYYKLHNVN
FBpp0303221	GATA	474	508	CVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQN
FBpp0303221	GATA	534	568	CANCKTTTTTLWRRNASGEPVCNACGLYYKLHNVN

Links
Other GATA family TFs
Other *Drosophila melanogaster* TFs

568 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ENSTSYG00000003874	Tarsius syrichta	ENSTSYG00000003874	N	0.000
TRERF1	Otolemur garnettii	ENSOGAG00000025610	N	0.000
ENSPANG00000009451	Papio anubis	ENSPANG00000009451	N	0.000
ENSPPYG00000016614	Pongo abelii	ENSPPYG00000016614	N	0.000
TRERF1	Pteropus vampyrus	ENSPVAG00000007626	N	0.000
Trerf1	Rattus norvegicus	ENSRNOG00000022598	N	0.000
ENSSHAG00000004599	Sarcophilus harrisii	ENSSHAG00000004599	N	0.000
TRERF1	Sus scrofa	ENSSSCG00000001639	N	0.000
ENSSTOG00000022996	Ictidomys tridecemlineatus	ENSSTOG00000022996	N	0.000
ENSTBEG00000012133	Tupaia belangeri	ENSTBEG00000012133	N	0.000
TRERF1	Taeniopygia guttata	ENSTGUG00000003250	N	0.000
ENSOARG00000003358	Ovis aries	ENSOARG00000003358	N	0.000
TRERF1	Tursiops truncatus	ENSTTRG00000014065	N	0.000
Aan_R011464	Calypte anna	Aan_R011464	N	0.000
Alligator_sinensis_CCG016667.1	Alligator sinensis	Alligator_sinensis_CCG016667.1	N	0.000
Cmyd_10010458	Chelonia mydas	Cmyd_10010458	N	0.000
ENSBTAP00000020376-D1	Bos grunniens	ENSBTAP00000020376-D1	N	0.000
ENSP00000362013	Macaca fascicularis	ENSP00000362013	N	0.000
Myotis_brandtii_Trerf1_10015386	Myotis brandtii	Myotis_brandtii_Trerf1_10015386	N	0.000
Ogr07462	Ophisaurus gracilis	Ogr07462	N	0.000
Pvit_13408	Pogona vitticeps	Pvit_13408	N	0.000
trerf1	Xenopus tropicalis	XB-GENE-940630	N	0.000
TRERF1	Gallus gallus	ENSGALG00000009896	N	0.000
ENSAPLG00000014876	Anas platyrhynchos	ENSAPLG00000014876	N	0.000
TRERF1	Bos taurus	ENSBTAG00000015321	N	0.000
TRERF1	Canis familiaris	ENSCAFG00000001642	N	0.000
TRERF1	Choloepus hoffmanni	ENSCHOG00000006120	N	0.000
TRERF1	Callithrix jacchus	ENSCJAG00000004347	N	0.000
TRERF1	Cavia porcellus	ENSCPOG00000015717	N	0.000
TRERF1	Equus caballus	ENSECAG00000016971	N	0.000
ENSFALG00000012590	Ficedula albicollis	ENSFALG00000012590	N	0.000
TRERF1	Felis catus	ENSFCAG00000011210	N	0.000
TRERF1	Homo sapiens	ENSG00000124496	N	0.000
TRERF1	Anolis carolinensis	ENSACAG00000001080	N	0.000
TRERF1	Gorilla gorilla	ENSGGOG00000012813	N	0.000
ENSLACG00000008926	Latimeria chalumnae	ENSLACG00000008926	N	0.000
TRERF1	Loxodonta africana	ENSLAFG00000007825	N	0.000
ENSLOCG00000017240	Lepisosteus oculatus	ENSLOCG00000017240	N	0.000
TRERF1	Meleagris gallopavo	ENSMGAG00000013894	N	0.000
TRERF1	Myotis lucifugus	ENSMLUG00000016748	N	0.000
TRERF1	Monodelphis domestica	ENSMODG00000019042	N	0.000
ENSMPUG00000013360	Mustela putorius furo	ENSMPUG00000013360	N	0.000
ENSNLEG00000004772	Nomascus leucogenys	ENSNLEG00000004772	N	0.000
TRERF1	Ornithorhynchus anatinus	ENSOANG00000008467	N	0.000

grn (Drosophila melanogaster) GATA

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

568 Related TFs

grn **(Drosophila melanogaster)
GATA**