Carubv10026597m.g (Capsella rubella)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Carubv10026597m.g T196471_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA26
M02001_2.00 		Arabidopsis thaliana
NNKATBNNNN
NNNNVATMNN		 PBM
Weirauch et al.(2014)
pTH7490 		0.867 0.972
GATA27
M02005_2.00 		Arabidopsis thaliana
NNGATBNNN
NNNVATCNN		 PBM
Weirauch et al.(2014)
pTH7492 		0.867 0.972
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10026597m GATA 7 42

Links

Other GATA family TFs
Other Capsella rubella TFs

69 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RO3G_05377 Rhizopus oryzae RO3G_05377 N
RO3G_17178 Rhizopus oryzae RO3G_17178 N
estExt_fgeneshMC_pg.C_20214 Mucor circinelloides estExt_fgeneshMC_pg.C_20214 N
fgeneshMC_pg.6_#_614 Mucor circinelloides fgeneshMC_pg.6_#_614 N
fgeneshPB_pg.26__26 Phycomyces blakesleeanus fgeneshPB_pg.26__26 N
fgeneshPB_pg.30__130 Phycomyces blakesleeanus fgeneshPB_pg.30__130 N
fgeneshPB_pg.4__728 Phycomyces blakesleeanus fgeneshPB_pg.4__728 N
gw1.40.70.1 Phycomyces blakesleeanus gw1.40.70.1 N