Ciclev10019614m.g (Citrus clementina)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Ciclev10019614m.g T196488_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA26
M02001_2.00 		Arabidopsis thaliana
NNKATBNNNN
NNNNVATMNN		 PBM
Weirauch et al.(2014)
pTH7490 		0.867 0.972
GATA27
M02005_2.00 		Arabidopsis thaliana
NNGATBNNN
NNNVATCNN		 PBM
Weirauch et al.(2014)
pTH7492 		0.867 0.972
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10019607m GATA 7 42
Ciclev10019614m GATA 7 42

Links

Other GATA family TFs
Other Citrus clementina TFs

70 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400027198 Solanum tuberosum PGSC0003DMG400027198 N 0.000
POPTR_0008s05750 Populus trichocarpa POPTR_0008s05750 N 0.000
Solyc05g053090.1 Solanum lycopersicum Solyc05g053090.1 N 0.000
TCM_042705 Theobroma cacao TCM_042705 N 0.000
VIT_13s0019g01710 Vitis vinifera VIT_13s0019g01710 N 0.000
VIT_13s0019g01810 Vitis vinifera VIT_13s0019g01810 N 0.000
Pm018822 Prunus mume Pm018822 N 0.000
cassava15723.m1 Manihot esculenta cassava15723.m1 N 0.000
cassava31335.valid.m1 Manihot esculenta cassava31335.valid.m1 N 0.000
Aquca_009_00954 Aquilegia coerulea Aquca_009_00954 N 0.000
Eucgr.G02939 Eucalyptus grandis Eucgr.G02939 N 0.000
Eucgr.G02941 Eucalyptus grandis Eucgr.G02941 N 0.000
evm.TU.supercontig_1.422 Carica papaya evm.TU.supercontig_1.422 N 0.000
Gorai.011G266200 Gossypium raimondii Gorai.011G266200 N 0.000
Lus10023404.g Linum usitatissimum Lus10023404.g N 0.000
SapurV1A.0451s0060 Salix purpurea SapurV1A.0451s0060 N 0.000