Lus10031096.g (Linum usitatissimum)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Lus10031096.g T196644_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA4
M00727_2.00 		Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN		 PBM
Chang et al.(2013)
pTH7196 		0.847 0.806
GATA9
M02002_2.00 		Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN		 PBM
Weirauch et al.(2014)
pTH7378 		0.847 0.806
GATA12
M00863_2.00 		Arabidopsis thaliana
NNNGATBN
NVATCNNN		 PBM
Franco-Zorrilla et al.(2014)
GATA12 		0.847 0.806
GATA12
M06895_2.00 		Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH		 Dap-seq
OMalley et al.(2016)
GATA12_col_a 		0.847 0.806
GATA12
M06896_2.00 		Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR		 Dap-seq
OMalley et al.(2016)
GATA12_colamp_a 		0.847 0.806
GATA4
M06891_2.00 		Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND		 Dap-seq
OMalley et al.(2016)
GATA4_col_a 		0.847 0.806
GATA6
M01999_2.00 		Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN		 PBM
Weirauch et al.(2014)
pTH7317 		0.837 0.861
GATA6
M06890_2.00 		Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR		 Dap-seq
OMalley et al.(2016)
GATA6_col200_a 		0.837 0.861
Q76DY3_TOBAC
M10600_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGP1_01 		0.837 0.833
GATA3
M02003_2.00 		Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN		 PBM
Weirauch et al.(2014)
pTH7657 		0.833 0.806
GATA1
M01998_2.00 		Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN		 PBM
Weirauch et al.(2014)
pTH8144 		0.832 0.806
GATA8
M02000_2.00 		Arabidopsis thaliana
NNGATYYVN
NBRRATCNN		 PBM
Weirauch et al.(2014)
pTH7665 		0.832 0.806
GATA1
M06887_2.00 		Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY		 Dap-seq
OMalley et al.(2016)
GATA1_col_a 		0.832 0.806
GATA1
M06888_2.00 		Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND		 Dap-seq
OMalley et al.(2016)
GATA1_colamp_a 		0.832 0.806
GATA7
M02004_2.00 		Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN		 PBM
Weirauch et al.(2014)
pTH7658 		0.823 0.861
GATA10
M01994_2.00 		Arabidopsis thaliana
CAGATCTA
TAGATCTG		 PBM
Weirauch et al.(2014)
pTH7615 		0.819 0.722
GATA11
M01995_2.00 		Arabidopsis thaliana
CAGATCTH
DAGATCTG		 PBM
Weirauch et al.(2014)
pTH7486 		0.819 0.722
GATA11
M06882_2.00 		Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD		 Dap-seq
OMalley et al.(2016)
GATA11_col_a 		0.819 0.722
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10031096 GATA 30 65

Links

Other GATA family TFs
Other Linum usitatissimum TFs

612 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MDP0000234814 Malus domestica MDP0000234814 N
Cucsa.019230 Cucumis sativus Cucsa.019230 N
Aquca_008_00101 Aquilegia coerulea Aquca_008_00101 N
Aquca_025_00175 Aquilegia coerulea Aquca_025_00175 N
Ciclev10000456m.g Citrus clementina Ciclev10000456m.g N
Ciclev10004395m.g Citrus clementina Ciclev10004395m.g N
Eucgr.G00085 Eucalyptus grandis Eucgr.G00085 N
Eucgr.K03522 Eucalyptus grandis Eucgr.K03522 N
evm.TU.supercontig_151.57 Carica papaya evm.TU.supercontig_151.57 N
gene05172-v1.0-hybrid Fragaria vesca gene05172-v1.0-hybrid N
gene29088-v1.0-hybrid Fragaria vesca gene29088-v1.0-hybrid N
Gorai.011G195800 Gossypium raimondii Gorai.011G195800 N
MDP0000233216 Malus domestica MDP0000233216 N
cassava28226.m1 Manihot esculenta cassava28226.m1 N
MDP0000786741 Malus domestica MDP0000786741 N
orange1.1g004420m.g Citrus sinensis orange1.1g004420m.g N
orange1.1g047253m.g Citrus sinensis orange1.1g047253m.g N
SapurV1A.0060s0220 Salix purpurea SapurV1A.0060s0220 N
SapurV1A.0158s0480 Salix purpurea SapurV1A.0158s0480 N
SapurV1A.0225s0240 Salix purpurea SapurV1A.0225s0240 N
PK06148.1 Cannabis sativa PK06148.1 N
PK12746.1 Cannabis sativa PK12746.1 N
PDK_20s1635961g004 Phoenix dactylifera PDK_20s1635961g004 N
PDK_20s1722071g001 Phoenix dactylifera PDK_20s1722071g001 N
PDK_20s1756181g001 Phoenix dactylifera PDK_20s1756181g001 N
TCM_041141 Theobroma cacao TCM_041141 N
BRADI5G11330 Brachypodium distachyon BRADI5G11330 N
GLYMA09G04394 Glycine max GLYMA09G04394 N
GLYMA10G00380 Glycine max GLYMA10G00380 N
GLYMA15G15450 Glycine max GLYMA15G15450 N
MLOC_15705 Hordeum vulgare MLOC_15705 N
POPTR_0004s23620 Populus trichocarpa POPTR_0004s23620 N
POPTR_0008s10810 Populus trichocarpa POPTR_0008s10810 N
PRUPE_ppa002003mg Prunus persica PRUPE_ppa002003mg N
PRUPE_ppa002379mg Prunus persica PRUPE_ppa002379mg N
Solyc01g103180.2 Solanum lycopersicum Solyc01g103180.2 N
Solyc09g075640.2 Solanum lycopersicum Solyc09g075640.2 N
TCM_021310 Theobroma cacao TCM_021310 N
FRS11 Arabidopsis thaliana AT1G10240 N
Traes_2AL_9A4A7514E Triticum aestivum Traes_2AL_9A4A7514E N
Traes_2BL_C1DE13045 Triticum aestivum Traes_2BL_C1DE13045 N
TRIUR3_11057 Triticum urartu TRIUR3_11057 N
VIT_05s0077g01400 Vitis vinifera VIT_05s0077g01400 N
VIT_07s0005g01120 Vitis vinifera VIT_07s0005g01120 N
VIT_12s0035g01360 Vitis vinifera VIT_12s0035g01360 N
Pm003854 Prunus mume Pm003854 N
Pm008290 Prunus mume Pm008290 N
29685.m000503 Ricinus communis 29685.m000503 N
29889.m003255 Ricinus communis 29889.m003255 N
cassava25471.m1 Manihot esculenta cassava25471.m1 N