CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SCL30
(
Arabidopsis thaliana
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03514 (GRAS)
IPR005202
AT3G46600
T199831_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT3G46600.1
GRAS
209
579
MRNLLMQCAQAVASFDQRRAFEKLKEIREHSSRHGDATQRLGYHFAEALEARITGTMTTPISATSSRTSMVDILKAYKGFVQACPTLIMCYFTANRTINELASKATTLHIIDFGILYGFQWPCLIQALSKRDIGPPLLRVTGIELPQSGFRPSERVEETGRRLKRFCDKFNVPFEYSFIAKNWENITLDDLVINSGETTVVNCILRLQYTPDETVSLNSPRDTALKLFRDINPDLFVFAEINGTYNSPFFLTRFREALFHCSSLFDMYETTLSEDDNCRTLVERELIIRDAMSVIACEGSERFARPETYKQWQVRILRAGFRPAKLSKQIVKDGKEIVKERYHKDFVIDNDNHWMFQGWKGRVLYAVSCWK
AT3G46600.2
GRAS
1
371
MRNLLMQCAQAVASFDQRRAFEKLKEIREHSSRHGDATQRLGYHFAEALEARITGTMTTPISATSSRTSMVDILKAYKGFVQACPTLIMCYFTANRTINELASKATTLHIIDFGILYGFQWPCLIQALSKRDIGPPLLRVTGIELPQSGFRPSERVEETGRRLKRFCDKFNVPFEYSFIAKNWENITLDDLVINSGETTVVNCILRLQYTPDETVSLNSPRDTALKLFRDINPDLFVFAEINGTYNSPFFLTRFREALFHCSSLFDMYETTLSEDDNCRTLVERELIIRDAMSVIACEGSERFARPETYKQWQVRILRAGFRPAKLSKQIVKDGKEIVKERYHKDFVIDNDNHWMFQGWKGRVLYAVSCWK
AT3G46600.3
GRAS
177
547
MRNLLMQCAQAVASFDQRRAFEKLKEIREHSSRHGDATQRLGYHFAEALEARITGTMTTPISATSSRTSMVDILKAYKGFVQACPTLIMCYFTANRTINELASKATTLHIIDFGILYGFQWPCLIQALSKRDIGPPLLRVTGIELPQSGFRPSERVEETGRRLKRFCDKFNVPFEYSFIAKNWENITLDDLVINSGETTVVNCILRLQYTPDETVSLNSPRDTALKLFRDINPDLFVFAEINGTYNSPFFLTRFREALFHCSSLFDMYETTLSEDDNCRTLVERELIIRDAMSVIACEGSERFARPETYKQWQVRILRAGFRPAKLSKQIVKDGKEIVKERYHKDFVIDNDNHWMFQGWKGRVLYAVSCWK
Links
Other
GRAS
family TFs
Other
Arabidopsis thaliana
TFs
15 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SCL11
Arabidopsis thaliana
AT5G59450
N
0.751
Bo1g070830
Brassica oleracea
Bo1g070830
N
0.865
Bo9g139410
Brassica oleracea
Bo9g139410
N
0.729
Bra033813
Brassica rapa
Bra033813
N
0.865
fgenesh2_kg.8__1893__AT5G59450.1
Arabidopsis lyrata
fgenesh2_kg.8__1893__AT5G59450.1
N
0.745
scaffold_501562.1
Arabidopsis lyrata
scaffold_501562.1
N
0.978
Bostr.18473s0299
Boechera stricta
Bostr.18473s0299
N
0.949
Bostr.26833s0299
Boechera stricta
Bostr.26833s0299
N
0.759
Cagra.0448s0009
Capsella grandiflora
Cagra.0448s0009
N
0.878
Cagra.1317s0069
Capsella grandiflora
Cagra.1317s0069
N
0.748
Carubv10016909m.g
Capsella rubella
Carubv10016909m.g
N
0.878
Carubv10028208m.g
Capsella rubella
Carubv10028208m.g
N
0.748
Thhalv10002455m.g
Eutrema salsugineum
Thhalv10002455m.g
N
0.883
Thhalv10013016m.g
Eutrema salsugineum
Thhalv10013016m.g
N
0.751