CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10003692m.g
(
Capsella rubella
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Carubv10003692m.g
T202341_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10003692m
GRAS
104
477
LVHLLVAAAEASTGVNKSRELTRVILARLKDLVSPGDSTNMERLAAHFTNGLSKLLERDNVLRPNQHRDDVYDQADVISAFEMLQNMSPYVNFGYLTTTQAILESVKYERRIHIVDYDIAEGVQWASLMQALLSRNTGTSAQHLRITALSRATNGKKSVASVQEAGRRLTTFAESIGQPFSFHHCKLENDAFNTSSLKLVRGEAMVINCMLHLPRFSHQTPNSVISFLLEAKTLNPKLVTLVHEEVGLMGNQGFLNRFMDLLHQFSAIFDSLEAGLSITNPARGFVERVFIGPWVANWLKRITADDTEVESFASWPQWLETNGFEPMEVSFANRCQAKLLLSLFNDGYRVEELGHNGLVLGWKSRRLVSASFWA
Links
Other
GRAS
family TFs
Other
Capsella rubella
TFs
7 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SCL26
Arabidopsis thaliana
AT4G08250
N
0.878
Bo9g120770
Brassica oleracea
Bo9g120770
N
0.806
Bra002894
Brassica rapa
Bra002894
N
0.803
scaffold_603155.1
Arabidopsis lyrata
scaffold_603155.1
N
0.879
Bostr.3877s0035
Boechera stricta
Bostr.3877s0035
N
0.904
Cagra.0196s0006
Capsella grandiflora
Cagra.0196s0006
N
0.997
Thhalv10028622m.g
Eutrema salsugineum
Thhalv10028622m.g
N
0.807