CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.001G089400
(
Gossypium raimondii
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Gorai.001G089400
T202598_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RGL2
M02031_2.00
Arabidopsis thaliana
NGTACGGHN
NDCCGTACN
PBM
Weirauch et al.(2014)
pTH8681
0.700
0.700
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.001G089400.1
GRAS
171
533
LVHTLMACAEAVQQDNLKLADALVKHIGLLASSQTGAMRKVATYFAEALARRIYRIFPPDSLDPSYNDKLQIPFYETCPYLKFAHFTANQAILEAFSMASRVHVIDFGLKQGMQWPALMQALALRHGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLAERIGIEFEFRGFVANSLADLEPEMLDIRPPEIEVVAVNAVFELHPLLARPGGIEKVVSSIKAMKPKIVTVVEQEANHNGPVFLDRFTEALHYYSTLFDSLEGSGVAPPSQDLAMSELYLGRQICNVVACEGMDRVERHEPLTQWRTRMETAGFSPVHLGSNAYKQASMLLALFASGDGYRVEENNGCLMLGWHTRPLIATSAWR
Links
Other
GRAS
family TFs
Other
Gossypium raimondii
TFs
96 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BGIOSGA008594
Oryza indica
BGIOSGA008594
N
0.000
BRADI3G48310
Brachypodium distachyon
BRADI3G48310
N
0.000
GRMZM2G117108
Zea mays
GRMZM2G117108
N
0.000
MLOC_80133
Hordeum vulgare
MLOC_80133
N
0.000
OB0054G10020
Oryza brachyantha
OB0054G10020
N
0.000
ORGLA02G0203300
Oryza glaberrima
ORGLA02G0203300
N
0.000
OS02G0608100
Oryza sativa
OS02G0608100
N
0.000
Sb04g025520
Sorghum bicolor
Sb04g025520
N
0.000
Si013246m.g
Setaria italica
Si013246m.g
N
0.000
Si015741m.g
Setaria italica
Si015741m.g
N
0.000
Traes_4DL_A9DA4DCF1
Triticum aestivum
Traes_4DL_A9DA4DCF1
N
0.000
TRIUR3_03147
Triticum urartu
TRIUR3_03147
N
0.000
Pavir.Ab02304
Panicum virgatum
Pavir.Ab02304
N
0.000
Pavir.J27368
Panicum virgatum
Pavir.J27368
N
0.000