Gorai.001G089400 (Gossypium raimondii)
GRAS

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03514 (GRAS) IPR005202 Gorai.001G089400 T202598_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RGL2
M02031_2.00 		Arabidopsis thaliana
NGTACGGHN
NDCCGTACN		 PBM
Weirauch et al.(2014)
pTH8681 		0.700 0.700
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.001G089400.1 GRAS 171 533

Links

Other GRAS family TFs
Other Gossypium raimondii TFs

96 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0004s08890 Populus trichocarpa POPTR_0004s08890 I 0.853
POPTR_0005s14540 Populus trichocarpa POPTR_0005s14540 I 0.853
MDP0000669451 Malus domestica MDP0000669451 I 0.853
Eucgr.J01594 Eucalyptus grandis Eucgr.J01594 I 0.850
evm.TU.supercontig_116.43 Carica papaya evm.TU.supercontig_116.43 I 0.850
Pm014329 Prunus mume Pm014329 I 0.847
cassava6237.valid.m1 Manihot esculenta cassava6237.valid.m1 I 0.844
Ciclev10011367m.g Citrus clementina Ciclev10011367m.g N 0.842
orange1.1g008153m.g Citrus sinensis orange1.1g008153m.g N 0.842
VIT_14s0006g00640 Vitis vinifera VIT_14s0006g00640 I 0.839
PRUPE_ppa003206mg Prunus persica PRUPE_ppa003206mg I 0.836
28677.m000055 Ricinus communis 28677.m000055 N 0.833
SapurV1A.0102s0220 Salix purpurea SapurV1A.0102s0220 N 0.831
TCM_019165 Theobroma cacao TCM_019165 N 0.819
Ca_13295 Cicer arietinum Ca_13295 I 0.808
Lus10017626.g Linum usitatissimum Lus10017626.g N 0.808
Lus10033583.g Linum usitatissimum Lus10033583.g N 0.806
GLYMA18G04500 Glycine max GLYMA18G04500 I 0.792
PGSC0003DMG400015692 Solanum tuberosum PGSC0003DMG400015692 N 0.789
Solyc11g011260.1 Solanum lycopersicum Solyc11g011260.1 N 0.789
Cla020062 Citrullus lanatus Cla020062 N 0.789
Pm006304 Prunus mume Pm006304 N 0.789
MTR_3g065980 Medicago truncatula MTR_3g065980 N 0.788
GLYMA11G33720 Glycine max GLYMA11G33720 I 0.786
PRUPE_ppa005944mg Prunus persica PRUPE_ppa005944mg N 0.783
29692.m000540 Ricinus communis 29692.m000540 N 0.783
POPTR_0008s13090 Populus trichocarpa POPTR_0008s13090 N 0.781
cassava15077.m1 Manihot esculenta cassava15077.m1 N 0.778
Gorai.002G177000 Gossypium raimondii Gorai.002G177000 N 0.778
TCM_010965 Theobroma cacao TCM_010965 N 0.775
PK14700.1 Cannabis sativa PK14700.1 N 0.775
AMTR_s00010p00148880 Amborella trichopoda AMTR_s00010p00148880 N 0.772
POPTR_0010s12080 Populus trichocarpa POPTR_0010s12080 N 0.772
GAI1 Vitis vinifera VIT_01s0011g05260 N 0.772
LjT15P09.140.nc Lotus japonicus LjT15P09.140.nc N 0.772
LjT40K11.90.nc Lotus japonicus LjT40K11.90.nc N 0.772
cassava14484.m1 Manihot esculenta cassava14484.m1 N 0.767
Cucsa.006260 Cucumis sativus Cucsa.006260 N 0.767
SapurV1A.0015s0210 Salix purpurea SapurV1A.0015s0210 N 0.764
SapurV1A.0405s0090 Salix purpurea SapurV1A.0405s0090 N 0.764
evm.TU.supercontig_2.240 Carica papaya evm.TU.supercontig_2.240 I 0.758
Eucgr.G02163 Eucalyptus grandis Eucgr.G02163 N 0.756
Ca_05046 Cicer arietinum Ca_05046 N 0.753
Cla003996 Citrullus lanatus Cla003996 N 0.753
MDP0000237978 Malus domestica MDP0000237978 N 0.753
Cucsa.280310 Cucumis sativus Cucsa.280310 N 0.750
Bostr.7903s0021 Boechera stricta Bostr.7903s0021 N 0.750
GLYMA05G27190 Glycine max GLYMA05G27190 N 0.747
mgf008289m Mimulus guttatus mgf008289m N 0.747
Cagra.2235s0013 Capsella grandiflora Cagra.2235s0013 N 0.747
Thhalv10005482m.g Eutrema salsugineum Thhalv10005482m.g N 0.747
GLYMA08G10140 Glycine max GLYMA08G10140 N 0.744
Aquca_091_00032 Aquilegia coerulea Aquca_091_00032 N 0.744
Ciclev10017466m.g Citrus clementina Ciclev10017466m.g N 0.744
orange1.1g043131m.g Citrus sinensis orange1.1g043131m.g N 0.744
RGA Arabidopsis thaliana AT2G01570 N 0.739
Bo7g078550 Brassica oleracea Bo7g078550 N 0.739
Bra024875 Brassica rapa Bra024875 N 0.739
RGA1 Arabidopsis lyrata fgenesh2_kg.5__65__AT2G01570.1 N 0.736
Bostr.7128s0107 Boechera stricta Bostr.7128s0107 N 0.728
Thhalv10007323m.g Eutrema salsugineum Thhalv10007323m.g N 0.728
Cagra.3501s0003 Capsella grandiflora Cagra.3501s0003 N 0.725
Carubv10008833m.g Capsella rubella Carubv10008833m.g N 0.725
Si039400m.g Setaria italica Si039400m.g N 0.722
GAI Arabidopsis thaliana AT1G14920 N 0.719
GAI Arabidopsis lyrata fgenesh2_kg.1__1634__AT1G14920.1 N 0.719
RGL2 Arabidopsis lyrata fgenesh2_kg.3__292__AT3G03450.1 I 0.719
mgf025772m Mimulus guttatus mgf025772m N 0.719
Pavir.Ia00840 Panicum virgatum Pavir.Ia00840 N 0.719
Pavir.Ib04357 Panicum virgatum Pavir.Ib04357 N 0.719
SLR1 Oryza indica BGIOSGA013420 N 0.717
LPERR03G26000 Leersia perrieri LPERR03G26000 N 0.717
OBART03G31370 Oryza barthii OBART03G31370 N 0.717
OGLUM03G31610 Oryza glumaepatula OGLUM03G31610 N 0.717
OMERI03G27970 Oryza meridionalis OMERI03G27970 N 0.717
ONIVA03G32670 Oryza nivara ONIVA03G32670 N 0.717
OPUNC03G28530 Oryza punctata OPUNC03G28530 N 0.717
ORGLA03G0290200 Oryza glaberrima ORGLA03G0290200 N 0.717
SLR1 Oryza sativa OS03G0707600 N 0.717
OB03G38380 Oryza brachyantha OB03G38380 N 0.714
ORUFI03G32650 Oryza rufipogon ORUFI03G32650 N 0.714
Cagra.0463s0002 Capsella grandiflora Cagra.0463s0002 N 0.714
Carubv10018534m.g Capsella rubella Carubv10018534m.g N 0.714
Sb01g010660 Sorghum bicolor Sb01g010660 N 0.711
Bostr.26959s0284 Boechera stricta Bostr.26959s0284 N 0.711
Carubv10020171m.g Capsella rubella Carubv10020171m.g N 0.711
RGL1 Arabidopsis thaliana AT1G66350 N 0.708
GRMZM2G144744 Zea mays GRMZM2G144744 N 0.708
Aquca_002_01300 Aquilegia coerulea Aquca_002_01300 N 0.708
RGL1 Arabidopsis lyrata fgenesh2_kg.2__868__AT1G66350.1 N 0.706
BRADI1G11090 Brachypodium distachyon BRADI1G11090 N 0.703
GRMZM2G024973 Zea mays GRMZM2G024973 N 0.703
MLOC_67940 Hordeum vulgare MLOC_67940 N 0.703
Carubv10015212m.g Capsella rubella Carubv10015212m.g I 0.702
RGL2 Arabidopsis thaliana AT3G03450 D 0.700
Traes_4BS_2EE4988CD Triticum aestivum Traes_4BS_2EE4988CD N 0.700