Carubv10015212m.g (Capsella rubella)
GRAS

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03514 (GRAS) IPR005202 Carubv10015212m.g T202354_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RGL2
M02031_2.00 		Arabidopsis thaliana
NGTACGGHN
NDCCGTACN		 PBM
Weirauch et al.(2014)
pTH8681 		0.894 0.894
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10015212m GRAS 186 546

Links

Other GRAS family TFs
Other Capsella rubella TFs

28 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.2098s0043 Capsella grandiflora Cagra.2098s0043 I 0.989
Bostr.19046s0061 Boechera stricta Bostr.19046s0061 I 0.911
RGL2 Arabidopsis thaliana AT3G03450 D 0.894
Bo5g149920 Brassica oleracea Bo5g149920 I 0.883
Thhalv10020431m.g Eutrema salsugineum Thhalv10020431m.g I 0.872
RGL2 Arabidopsis lyrata fgenesh2_kg.3__292__AT3G03450.1 I 0.869
Bo9g160170 Brassica oleracea Bo9g160170 I 0.794
Bra013973 Brassica rapa Bra013973 I 0.791
Bostr.26527s0463 Boechera stricta Bostr.26527s0463 I 0.777
RGL3 Arabidopsis lyrata fgenesh2_kg.6__1749__AT5G17490.1 I 0.777
RGL3 Arabidopsis thaliana AT5G17490 I 0.777
Thhalv10015535m.g Eutrema salsugineum Thhalv10015535m.g I 0.772
Carubv10003592m.g Capsella rubella Carubv10003592m.g I 0.769
Cagra.6170s0019 Capsella grandiflora Cagra.6170s0019 I 0.769
GLYMA18G04500 Glycine max GLYMA18G04500 I 0.733
GLYMA11G33720 Glycine max GLYMA11G33720 I 0.724
Pm014329 Prunus mume Pm014329 I 0.713
Ca_13295 Cicer arietinum Ca_13295 I 0.713
PRUPE_ppa003206mg Prunus persica PRUPE_ppa003206mg I 0.710
evm.TU.supercontig_116.43 Carica papaya evm.TU.supercontig_116.43 I 0.710
VIT_14s0006g00640 Vitis vinifera VIT_14s0006g00640 I 0.708
LjT40K11.90.nc Lotus japonicus LjT40K11.90.nc N 0.708
Eucgr.J01594 Eucalyptus grandis Eucgr.J01594 I 0.708
LjT15P09.140.nc Lotus japonicus LjT15P09.140.nc N 0.708
POPTR_0005s14540 Populus trichocarpa POPTR_0005s14540 I 0.708
cassava6237.valid.m1 Manihot esculenta cassava6237.valid.m1 I 0.705
Gorai.001G089400 Gossypium raimondii Gorai.001G089400 I 0.702
MDP0000669451 Malus domestica MDP0000669451 I 0.702