MDP0000669451 (Malus domestica)
GRAS

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03514 (GRAS) IPR005202 MDP0000669451 T202896_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RGL2
M02031_2.00 		Arabidopsis thaliana
NGTACGGHN
NDCCGTACN		 PBM
Weirauch et al.(2014)
pTH8681 		0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000669451 GRAS 218 578

Links

Other GRAS family TFs
Other Malus domestica TFs

105 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pm014329 Prunus mume Pm014329 I 0.950
PRUPE_ppa003206mg Prunus persica PRUPE_ppa003206mg I 0.944
VIT_14s0006g00640 Vitis vinifera VIT_14s0006g00640 I 0.899
cassava6237.valid.m1 Manihot esculenta cassava6237.valid.m1 I 0.897
POPTR_0004s08890 Populus trichocarpa POPTR_0004s08890 I 0.894
POPTR_0005s14540 Populus trichocarpa POPTR_0005s14540 I 0.892
Ciclev10011367m.g Citrus clementina Ciclev10011367m.g N 0.883
orange1.1g008153m.g Citrus sinensis orange1.1g008153m.g N 0.881
Eucgr.J01594 Eucalyptus grandis Eucgr.J01594 I 0.878
TCM_019165 Theobroma cacao TCM_019165 N 0.874
GLYMA18G04500 Glycine max GLYMA18G04500 I 0.872
28677.m000055 Ricinus communis 28677.m000055 N 0.872
Lus10017626.g Linum usitatissimum Lus10017626.g N 0.872
Lus10033583.g Linum usitatissimum Lus10033583.g N 0.869
evm.TU.supercontig_116.43 Carica papaya evm.TU.supercontig_116.43 I 0.862
GLYMA11G33720 Glycine max GLYMA11G33720 I 0.860
Gorai.001G089400 Gossypium raimondii Gorai.001G089400 I 0.853
PGSC0003DMG400015692 Solanum tuberosum PGSC0003DMG400015692 N 0.844
Solyc11g011260.1 Solanum lycopersicum Solyc11g011260.1 N 0.844
SapurV1A.0102s0220 Salix purpurea SapurV1A.0102s0220 N 0.841
Cla020062 Citrullus lanatus Cla020062 N 0.830
LjT15P09.140.nc Lotus japonicus LjT15P09.140.nc N 0.830
LjT40K11.90.nc Lotus japonicus LjT40K11.90.nc N 0.830
MTR_3g065980 Medicago truncatula MTR_3g065980 N 0.825
TCM_010965 Theobroma cacao TCM_010965 N 0.821
GAI1 Vitis vinifera VIT_01s0011g05260 N 0.821
29692.m000540 Ricinus communis 29692.m000540 N 0.821
Cucsa.006260 Cucumis sativus Cucsa.006260 N 0.818
Ca_13295 Cicer arietinum Ca_13295 I 0.816
cassava15077.m1 Manihot esculenta cassava15077.m1 N 0.813
PK14700.1 Cannabis sativa PK14700.1 N 0.812
POPTR_0008s13090 Populus trichocarpa POPTR_0008s13090 N 0.807
POPTR_0010s12080 Populus trichocarpa POPTR_0010s12080 N 0.807
cassava14484.m1 Manihot esculenta cassava14484.m1 N 0.804
evm.TU.supercontig_2.240 Carica papaya evm.TU.supercontig_2.240 I 0.804
Gorai.002G177000 Gossypium raimondii Gorai.002G177000 N 0.804
SapurV1A.0405s0090 Salix purpurea SapurV1A.0405s0090 N 0.801
AMTR_s00010p00148880 Amborella trichopoda AMTR_s00010p00148880 N 0.799
SapurV1A.0015s0210 Salix purpurea SapurV1A.0015s0210 N 0.798
mgf008289m Mimulus guttatus mgf008289m N 0.788
Aquca_091_00032 Aquilegia coerulea Aquca_091_00032 N 0.785
Pm006304 Prunus mume Pm006304 N 0.784
Cla003996 Citrullus lanatus Cla003996 N 0.782
PRUPE_ppa005944mg Prunus persica PRUPE_ppa005944mg N 0.779
Cucsa.280310 Cucumis sativus Cucsa.280310 N 0.777
Ca_05046 Cicer arietinum Ca_05046 N 0.768
Bostr.7903s0021 Boechera stricta Bostr.7903s0021 N 0.768
Cagra.2235s0013 Capsella grandiflora Cagra.2235s0013 N 0.768
Eucgr.G02163 Eucalyptus grandis Eucgr.G02163 N 0.768
orange1.1g043131m.g Citrus sinensis orange1.1g043131m.g N 0.763
Thhalv10005482m.g Eutrema salsugineum Thhalv10005482m.g N 0.763
Bostr.7128s0107 Boechera stricta Bostr.7128s0107 N 0.760
MDP0000237978 Malus domestica MDP0000237978 N 0.760
Ciclev10017466m.g Citrus clementina Ciclev10017466m.g N 0.758
RGA Arabidopsis thaliana AT2G01570 N 0.757
Bo7g078550 Brassica oleracea Bo7g078550 N 0.757
Bra024875 Brassica rapa Bra024875 N 0.757
RGA1 Arabidopsis lyrata fgenesh2_kg.5__65__AT2G01570.1 N 0.757
GLYMA05G27190 Glycine max GLYMA05G27190 N 0.757
GLYMA08G10140 Glycine max GLYMA08G10140 N 0.757
GAI Arabidopsis lyrata fgenesh2_kg.1__1634__AT1G14920.1 N 0.751
GAI Arabidopsis thaliana AT1G14920 N 0.749
RGL2 Arabidopsis lyrata fgenesh2_kg.3__292__AT3G03450.1 I 0.749
Cagra.3501s0003 Capsella grandiflora Cagra.3501s0003 N 0.749
Carubv10008833m.g Capsella rubella Carubv10008833m.g N 0.748
Thhalv10007323m.g Eutrema salsugineum Thhalv10007323m.g N 0.748
Aquca_002_01300 Aquilegia coerulea Aquca_002_01300 N 0.742
Traes_4AL_77F4CC833 Triticum aestivum Traes_4AL_77F4CC833 N 0.740
Carubv10018534m.g Capsella rubella Carubv10018534m.g N 0.735
Carubv10020171m.g Capsella rubella Carubv10020171m.g N 0.735
LPERR03G26000 Leersia perrieri LPERR03G26000 N 0.732
SLR1 Oryza sativa OS03G0707600 N 0.732
Pavir.Ia00840 Panicum virgatum Pavir.Ia00840 N 0.732
Pavir.Ib04357 Panicum virgatum Pavir.Ib04357 N 0.732
F775_03572 Aegilops tauschii F775_03572 N 0.731
RGL1 Arabidopsis lyrata fgenesh2_kg.2__868__AT1G66350.1 N 0.730
Sb01g010660 Sorghum bicolor Sb01g010660 N 0.729
Thhalv10015535m.g Eutrema salsugineum Thhalv10015535m.g I 0.729
BRADI1G11090 Brachypodium distachyon BRADI1G11090 N 0.726
MLOC_67940 Hordeum vulgare MLOC_67940 N 0.726
SLR1 Oryza indica BGIOSGA013420 N 0.724
OBART03G31370 Oryza barthii OBART03G31370 N 0.724
OMERI03G27970 Oryza meridionalis OMERI03G27970 N 0.724
ONIVA03G32670 Oryza nivara ONIVA03G32670 N 0.724
ORGLA03G0290200 Oryza glaberrima ORGLA03G0290200 N 0.724
OB03G38380 Oryza brachyantha OB03G38380 N 0.723
Cagra.0463s0002 Capsella grandiflora Cagra.0463s0002 N 0.723
GRMZM2G144744 Zea mays GRMZM2G144744 N 0.722
Si039400m.g Setaria italica Si039400m.g N 0.722
OGLUM03G31610 Oryza glumaepatula OGLUM03G31610 N 0.721
OPUNC03G28530 Oryza punctata OPUNC03G28530 N 0.721
ORUFI03G32650 Oryza rufipogon ORUFI03G32650 N 0.721
mgf025772m Mimulus guttatus mgf025772m N 0.721
GRMZM2G024973 Zea mays GRMZM2G024973 N 0.719
Traes_4BS_2EE4988CD Triticum aestivum Traes_4BS_2EE4988CD N 0.719
RGL1 Arabidopsis thaliana AT1G66350 N 0.718
Traes_4DS_ADBA6E30A Triticum aestivum Traes_4DS_ADBA6E30A N 0.718
Bostr.26959s0284 Boechera stricta Bostr.26959s0284 N 0.718
Thhalv10018436m.g Eutrema salsugineum Thhalv10018436m.g N 0.715
Thhalv10020431m.g Eutrema salsugineum Thhalv10020431m.g I 0.715
Bostr.19046s0061 Boechera stricta Bostr.19046s0061 I 0.712
Bo2g052880 Brassica oleracea Bo2g052880 N 0.707
Cagra.2098s0043 Capsella grandiflora Cagra.2098s0043 I 0.704
Carubv10015212m.g Capsella rubella Carubv10015212m.g I 0.702
SapurV1A.0230s0190 Salix purpurea SapurV1A.0230s0190 N 0.700