Cagra.2098s0043 (Capsella grandiflora)
GRAS

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03514 (GRAS) IPR005202 Cagra.2098s0043 T202324_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RGL2
M02031_2.00 		Arabidopsis thaliana
NGTACGGHN
NDCCGTACN		 PBM
Weirauch et al.(2014)
pTH8681 		0.889 0.889
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.2098s0043.1.p GRAS 185 545

Links

Other GRAS family TFs
Other Capsella grandiflora TFs

25 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10015212m.g Capsella rubella Carubv10015212m.g I 0.989
Bostr.19046s0061 Boechera stricta Bostr.19046s0061 I 0.903
RGL2 Arabidopsis thaliana AT3G03450 D 0.876
Bo5g149920 Brassica oleracea Bo5g149920 I 0.875
RGL2 Arabidopsis lyrata fgenesh2_kg.3__292__AT3G03450.1 I 0.859
Thhalv10020431m.g Eutrema salsugineum Thhalv10020431m.g I 0.857
Bo9g160170 Brassica oleracea Bo9g160170 I 0.790
Bra013973 Brassica rapa Bra013973 I 0.788
RGL3 Arabidopsis thaliana AT5G17490 I 0.774
Bostr.26527s0463 Boechera stricta Bostr.26527s0463 I 0.774
RGL3 Arabidopsis lyrata fgenesh2_kg.6__1749__AT5G17490.1 I 0.774
Thhalv10015535m.g Eutrema salsugineum Thhalv10015535m.g I 0.768
Carubv10003592m.g Capsella rubella Carubv10003592m.g I 0.765
Cagra.6170s0019 Capsella grandiflora Cagra.6170s0019 I 0.765
GLYMA18G04500 Glycine max GLYMA18G04500 I 0.735
GRMZM2G144744 Zea mays GRMZM2G144744 N 0.733
GLYMA11G33720 Glycine max GLYMA11G33720 I 0.727
Pm014329 Prunus mume Pm014329 I 0.715
PRUPE_ppa003206mg Prunus persica PRUPE_ppa003206mg I 0.712
MDP0000669451 Malus domestica MDP0000669451 I 0.704
Ca_13295 Cicer arietinum Ca_13295 I 0.703
LjT40K11.90.nc Lotus japonicus LjT40K11.90.nc N 0.702
LjT15P09.140.nc Lotus japonicus LjT15P09.140.nc N 0.702
evm.TU.supercontig_116.43 Carica papaya evm.TU.supercontig_116.43 I 0.701
VIT_14s0006g00640 Vitis vinifera VIT_14s0006g00640 I 0.700