RGL2 (Arabidopsis lyrata)
GRAS

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03514 (GRAS) IPR005202 fgenesh2_kg.3__292__AT3G03450.1 T200124_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RGL2
M02031_2.00 		Arabidopsis thaliana
NGTACGGHN
NDCCGTACN		 PBM
Weirauch et al.(2014)
pTH8681 		0.909 0.909
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.3__292__AT3G03450.1 GRAS 174 536

Links

Other GRAS family TFs
Other Arabidopsis lyrata TFs

52 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RGL2 Arabidopsis thaliana AT3G03450 D 0.901
Bostr.19046s0061 Boechera stricta Bostr.19046s0061 I 0.886
Carubv10015212m.g Capsella rubella Carubv10015212m.g I 0.869
Cagra.2098s0043 Capsella grandiflora Cagra.2098s0043 I 0.859
Thhalv10020431m.g Eutrema salsugineum Thhalv10020431m.g I 0.840
Bo5g149920 Brassica oleracea Bo5g149920 I 0.839
Thhalv10015535m.g Eutrema salsugineum Thhalv10015535m.g I 0.804
Bo9g160170 Brassica oleracea Bo9g160170 I 0.774
Bra013973 Brassica rapa Bra013973 I 0.771
Pm014329 Prunus mume Pm014329 I 0.760
PRUPE_ppa003206mg Prunus persica PRUPE_ppa003206mg I 0.757
RGL3 Arabidopsis thaliana AT5G17490 I 0.754
GLYMA18G04500 Glycine max GLYMA18G04500 I 0.753
RGL3 Arabidopsis lyrata fgenesh2_kg.6__1749__AT5G17490.1 I 0.751
Bostr.26527s0463 Boechera stricta Bostr.26527s0463 I 0.751
Lus10009133.g Linum usitatissimum Lus10009133.g N 0.749
MDP0000669451 Malus domestica MDP0000669451 I 0.749
GLYMA11G33720 Glycine max GLYMA11G33720 I 0.748
evm.TU.supercontig_116.43 Carica papaya evm.TU.supercontig_116.43 I 0.748
Cagra.6170s0019 Capsella grandiflora Cagra.6170s0019 I 0.746
Carubv10003592m.g Capsella rubella Carubv10003592m.g I 0.746
POPTR_0005s14540 Populus trichocarpa POPTR_0005s14540 I 0.740
Ca_13295 Cicer arietinum Ca_13295 I 0.736
cassava6237.valid.m1 Manihot esculenta cassava6237.valid.m1 I 0.736
Eucgr.J01594 Eucalyptus grandis Eucgr.J01594 I 0.734
POPTR_0004s08890 Populus trichocarpa POPTR_0004s08890 I 0.731
TCM_019165 Theobroma cacao TCM_019165 N 0.728
VIT_14s0006g00640 Vitis vinifera VIT_14s0006g00640 I 0.728
Ciclev10011367m.g Citrus clementina Ciclev10011367m.g N 0.728
orange1.1g008153m.g Citrus sinensis orange1.1g008153m.g N 0.725
MTR_3g065980 Medicago truncatula MTR_3g065980 N 0.724
LjT15P09.140.nc Lotus japonicus LjT15P09.140.nc N 0.724
LjT40K11.90.nc Lotus japonicus LjT40K11.90.nc N 0.724
28677.m000055 Ricinus communis 28677.m000055 N 0.722
Gorai.001G089400 Gossypium raimondii Gorai.001G089400 I 0.719
Cla020062 Citrullus lanatus Cla020062 N 0.717
Pm006304 Prunus mume Pm006304 N 0.717
SapurV1A.0102s0220 Salix purpurea SapurV1A.0102s0220 N 0.717
Lus10033583.g Linum usitatissimum Lus10033583.g N 0.715
evm.TU.supercontig_2.240 Carica papaya evm.TU.supercontig_2.240 I 0.712
Lus10017626.g Linum usitatissimum Lus10017626.g N 0.712
PRUPE_ppa005944mg Prunus persica PRUPE_ppa005944mg N 0.711
RGL1 Arabidopsis lyrata fgenesh2_kg.2__868__AT1G66350.1 N 0.710
Bra039762 Brassica rapa Bra039762 N 0.709
Carubv10020171m.g Capsella rubella Carubv10020171m.g N 0.709
Thhalv10018436m.g Eutrema salsugineum Thhalv10018436m.g N 0.707
Solyc11g011260.1 Solanum lycopersicum Solyc11g011260.1 N 0.706
MDP0000237978 Malus domestica MDP0000237978 N 0.706
PGSC0003DMG400015692 Solanum tuberosum PGSC0003DMG400015692 N 0.704
Cucsa.006260 Cucumis sativus Cucsa.006260 N 0.704
TCM_010965 Theobroma cacao TCM_010965 N 0.700
cassava15077.m1 Manihot esculenta cassava15077.m1 N 0.700