POPTR_0004s08890 (Populus trichocarpa)
GRAS

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03514 (GRAS) IPR005202 POPTR_0004s08890 T201188_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RGL2
M02031_2.00 		Arabidopsis thaliana
NGTACGGHN
NDCCGTACN		 PBM
Weirauch et al.(2014)
pTH8681 		0.701 0.701
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0004s08890.1 GRAS 236 599
POPTR_0004s08890.2 GRAS 60 423

Links

Other GRAS family TFs
Other Populus trichocarpa TFs

105 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0005s14540 Populus trichocarpa POPTR_0005s14540 I 0.964
cassava6237.valid.m1 Manihot esculenta cassava6237.valid.m1 I 0.903
SapurV1A.0102s0220 Salix purpurea SapurV1A.0102s0220 N 0.903
MDP0000669451 Malus domestica MDP0000669451 I 0.894
28677.m000055 Ricinus communis 28677.m000055 N 0.883
Ciclev10011367m.g Citrus clementina Ciclev10011367m.g N 0.881
orange1.1g008153m.g Citrus sinensis orange1.1g008153m.g N 0.878
Pm014329 Prunus mume Pm014329 I 0.877
Lus10009133.g Linum usitatissimum Lus10009133.g N 0.874
PRUPE_ppa003206mg Prunus persica PRUPE_ppa003206mg I 0.869
evm.TU.supercontig_116.43 Carica papaya evm.TU.supercontig_116.43 I 0.864
VIT_14s0006g00640 Vitis vinifera VIT_14s0006g00640 I 0.856
Eucgr.J01594 Eucalyptus grandis Eucgr.J01594 I 0.856
TCM_019165 Theobroma cacao TCM_019165 N 0.854
Gorai.001G089400 Gossypium raimondii Gorai.001G089400 I 0.853
Lus10033583.g Linum usitatissimum Lus10033583.g N 0.849
GLYMA18G04500 Glycine max GLYMA18G04500 I 0.848
Lus10017626.g Linum usitatissimum Lus10017626.g N 0.845
GLYMA11G33720 Glycine max GLYMA11G33720 I 0.839
LjT15P09.140.nc Lotus japonicus LjT15P09.140.nc N 0.825
LjT40K11.90.nc Lotus japonicus LjT40K11.90.nc N 0.825
Ca_13295 Cicer arietinum Ca_13295 I 0.819
PGSC0003DMG400015692 Solanum tuberosum PGSC0003DMG400015692 N 0.817
Solyc11g011260.1 Solanum lycopersicum Solyc11g011260.1 N 0.817
MTR_3g065980 Medicago truncatula MTR_3g065980 N 0.816
evm.TU.supercontig_2.240 Carica papaya evm.TU.supercontig_2.240 I 0.810
Cla020062 Citrullus lanatus Cla020062 N 0.809
29692.m000540 Ricinus communis 29692.m000540 N 0.807
GAI1 Vitis vinifera VIT_01s0011g05260 N 0.803
POPTR_0008s13090 Populus trichocarpa POPTR_0008s13090 N 0.798
TCM_010965 Theobroma cacao TCM_010965 N 0.798
cassava15077.m1 Manihot esculenta cassava15077.m1 N 0.798
PK14700.1 Cannabis sativa PK14700.1 N 0.798
AMTR_s00010p00148880 Amborella trichopoda AMTR_s00010p00148880 N 0.788
SapurV1A.0015s0210 Salix purpurea SapurV1A.0015s0210 N 0.787
POPTR_0010s12080 Populus trichocarpa POPTR_0010s12080 N 0.784
Pm006304 Prunus mume Pm006304 N 0.784
Cucsa.006260 Cucumis sativus Cucsa.006260 N 0.784
Gorai.002G177000 Gossypium raimondii Gorai.002G177000 N 0.784
SapurV1A.0405s0090 Salix purpurea SapurV1A.0405s0090 N 0.784
cassava14484.m1 Manihot esculenta cassava14484.m1 N 0.781
PRUPE_ppa005944mg Prunus persica PRUPE_ppa005944mg N 0.779
Cagra.2235s0013 Capsella grandiflora Cagra.2235s0013 N 0.777
Bostr.7903s0021 Boechera stricta Bostr.7903s0021 N 0.774
Thhalv10005482m.g Eutrema salsugineum Thhalv10005482m.g N 0.774
Cla003996 Citrullus lanatus Cla003996 N 0.773
RGA Arabidopsis thaliana AT2G01570 N 0.771
RGA1 Arabidopsis lyrata fgenesh2_kg.5__65__AT2G01570.1 N 0.771
Eucgr.G02163 Eucalyptus grandis Eucgr.G02163 N 0.771
Cucsa.280310 Cucumis sativus Cucsa.280310 N 0.770
mgf008289m Mimulus guttatus mgf008289m N 0.767
Aquca_091_00032 Aquilegia coerulea Aquca_091_00032 N 0.767
Bo7g078550 Brassica oleracea Bo7g078550 N 0.765
Bra024875 Brassica rapa Bra024875 N 0.765
Ca_05046 Cicer arietinum Ca_05046 N 0.765
Bostr.7128s0107 Boechera stricta Bostr.7128s0107 N 0.759
Carubv10008833m.g Capsella rubella Carubv10008833m.g N 0.759
Thhalv10007323m.g Eutrema salsugineum Thhalv10007323m.g N 0.759
SapurV1A.0230s0190 Salix purpurea SapurV1A.0230s0190 N 0.757
GAI Arabidopsis thaliana AT1G14920 N 0.756
GAI Arabidopsis lyrata fgenesh2_kg.1__1634__AT1G14920.1 N 0.756
Carubv10018534m.g Capsella rubella Carubv10018534m.g N 0.756
MDP0000237978 Malus domestica MDP0000237978 N 0.753
Cagra.3501s0003 Capsella grandiflora Cagra.3501s0003 N 0.751
GLYMA08G10140 Glycine max GLYMA08G10140 N 0.749
Ciclev10017466m.g Citrus clementina Ciclev10017466m.g N 0.749
orange1.1g043131m.g Citrus sinensis orange1.1g043131m.g N 0.748
GLYMA05G27190 Glycine max GLYMA05G27190 N 0.746
F775_03572 Aegilops tauschii F775_03572 N 0.741
RGL2 Arabidopsis lyrata fgenesh2_kg.3__292__AT3G03450.1 I 0.731
AMTR_s00012p00140480 Amborella trichopoda AMTR_s00012p00140480 N 0.730
RGL1 Arabidopsis lyrata fgenesh2_kg.2__868__AT1G66350.1 N 0.727
Traes_4AL_77F4CC833 Triticum aestivum Traes_4AL_77F4CC833 N 0.727
Carubv10020171m.g Capsella rubella Carubv10020171m.g N 0.724
Pavir.Ia00840 Panicum virgatum Pavir.Ia00840 N 0.723
Pavir.Ib04357 Panicum virgatum Pavir.Ib04357 N 0.723
Aquca_002_01300 Aquilegia coerulea Aquca_002_01300 N 0.722
Si039400m.g Setaria italica Si039400m.g N 0.719
Thhalv10018436m.g Eutrema salsugineum Thhalv10018436m.g N 0.718
GRMZM2G024973 Zea mays GRMZM2G024973 N 0.717
GRMZM2G144744 Zea mays GRMZM2G144744 N 0.717
BRADI1G11090 Brachypodium distachyon BRADI1G11090 N 0.715
SLR1 Oryza sativa OS03G0707600 N 0.715
Sb01g010660 Sorghum bicolor Sb01g010660 N 0.715
MLOC_67940 Hordeum vulgare MLOC_67940 N 0.714
Traes_4BS_2EE4988CD Triticum aestivum Traes_4BS_2EE4988CD N 0.714
SLR1 Oryza indica BGIOSGA013420 N 0.713
OBART03G31370 Oryza barthii OBART03G31370 N 0.713
OGLUM03G31610 Oryza glumaepatula OGLUM03G31610 N 0.713
OMERI03G27970 Oryza meridionalis OMERI03G27970 N 0.713
ONIVA03G32670 Oryza nivara ONIVA03G32670 N 0.713
OPUNC03G28530 Oryza punctata OPUNC03G28530 N 0.713
ORGLA03G0290200 Oryza glaberrima ORGLA03G0290200 N 0.713
ORUFI03G32650 Oryza rufipogon ORUFI03G32650 N 0.713
mgf025772m Mimulus guttatus mgf025772m N 0.712
LPERR03G26000 Leersia perrieri LPERR03G26000 N 0.710
RGL1 Arabidopsis thaliana AT1G66350 N 0.709
Bo2g052880 Brassica oleracea Bo2g052880 N 0.709
Bra039762 Brassica rapa Bra039762 N 0.709
Traes_4DS_ADBA6E30A Triticum aestivum Traes_4DS_ADBA6E30A N 0.709
OB03G38380 Oryza brachyantha OB03G38380 N 0.707
Cagra.0463s0002 Capsella grandiflora Cagra.0463s0002 N 0.706
Thhalv10020431m.g Eutrema salsugineum Thhalv10020431m.g I 0.705
Thhalv10015535m.g Eutrema salsugineum Thhalv10015535m.g I 0.704