RGA1 (Arabidopsis lyrata)
GRAS

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03514 (GRAS) IPR005202 fgenesh2_kg.5__65__AT2G01570.1 T200129_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.5__65__AT2G01570.1 GRAS 214 574

Links

Other GRAS family TFs
Other Arabidopsis lyrata TFs

70 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.7903s0021 Boechera stricta Bostr.7903s0021 N 0.975
RGA Arabidopsis thaliana AT2G01570 N 0.975
Cagra.2235s0013 Capsella grandiflora Cagra.2235s0013 N 0.969
Thhalv10005482m.g Eutrema salsugineum Thhalv10005482m.g N 0.953
Bra024875 Brassica rapa Bra024875 N 0.941
Bo7g078550 Brassica oleracea Bo7g078550 N 0.939
Carubv10018534m.g Capsella rubella Carubv10018534m.g N 0.930
Thhalv10007323m.g Eutrema salsugineum Thhalv10007323m.g N 0.860
Cagra.3501s0003 Capsella grandiflora Cagra.3501s0003 N 0.858
GAI Arabidopsis thaliana AT1G14920 N 0.858
Carubv10008833m.g Capsella rubella Carubv10008833m.g N 0.857
GAI Arabidopsis lyrata fgenesh2_kg.1__1634__AT1G14920.1 N 0.855
cassava15077.m1 Manihot esculenta cassava15077.m1 N 0.855
POPTR_0008s13090 Populus trichocarpa POPTR_0008s13090 N 0.854
Bostr.7128s0107 Boechera stricta Bostr.7128s0107 N 0.852
29692.m000540 Ricinus communis 29692.m000540 N 0.852
TCM_010965 Theobroma cacao TCM_010965 N 0.849
SapurV1A.0015s0210 Salix purpurea SapurV1A.0015s0210 N 0.838
Gorai.002G177000 Gossypium raimondii Gorai.002G177000 N 0.835
cassava14484.m1 Manihot esculenta cassava14484.m1 N 0.835
SapurV1A.0405s0090 Salix purpurea SapurV1A.0405s0090 N 0.832
evm.TU.supercontig_2.240 Carica papaya evm.TU.supercontig_2.240 I 0.832
POPTR_0010s12080 Populus trichocarpa POPTR_0010s12080 N 0.832
Bo9g070200 Brassica oleracea Bo9g070200 N 0.830
PK14700.1 Cannabis sativa PK14700.1 N 0.829
Bra017443 Brassica rapa Bra017443 N 0.827
Eucgr.G02163 Eucalyptus grandis Eucgr.G02163 N 0.827
Cla003996 Citrullus lanatus Cla003996 N 0.821
Cucsa.280310 Cucumis sativus Cucsa.280310 N 0.821
GAI1 Vitis vinifera VIT_01s0011g05260 N 0.818
Pm006304 Prunus mume Pm006304 N 0.804
PRUPE_ppa005944mg Prunus persica PRUPE_ppa005944mg N 0.801
GLYMA05G27190 Glycine max GLYMA05G27190 N 0.793
Ca_05046 Cicer arietinum Ca_05046 N 0.788
MDP0000237978 Malus domestica MDP0000237978 N 0.788
orange1.1g043131m.g Citrus sinensis orange1.1g043131m.g N 0.782
Ciclev10017466m.g Citrus clementina Ciclev10017466m.g N 0.780
GLYMA08G10140 Glycine max GLYMA08G10140 N 0.779
POPTR_0004s08890 Populus trichocarpa POPTR_0004s08890 I 0.771
POPTR_0005s14540 Populus trichocarpa POPTR_0005s14540 I 0.767
VIT_14s0006g00640 Vitis vinifera VIT_14s0006g00640 I 0.765
mgf008289m Mimulus guttatus mgf008289m N 0.764
PGSC0003DMG400015692 Solanum tuberosum PGSC0003DMG400015692 N 0.763
Solyc11g011260.1 Solanum lycopersicum Solyc11g011260.1 N 0.760
MDP0000669451 Malus domestica MDP0000669451 I 0.757
Pm014329 Prunus mume Pm014329 I 0.757
PRUPE_ppa003206mg Prunus persica PRUPE_ppa003206mg I 0.754
Ciclev10011367m.g Citrus clementina Ciclev10011367m.g N 0.753
cassava6237.valid.m1 Manihot esculenta cassava6237.valid.m1 I 0.753
orange1.1g008153m.g Citrus sinensis orange1.1g008153m.g N 0.753
Aquca_091_00032 Aquilegia coerulea Aquca_091_00032 N 0.751
28677.m000055 Ricinus communis 28677.m000055 N 0.746
AMTR_s00010p00148880 Amborella trichopoda AMTR_s00010p00148880 N 0.746
GLYMA18G04500 Glycine max GLYMA18G04500 I 0.743
MTR_3g065980 Medicago truncatula MTR_3g065980 N 0.741
TCM_019165 Theobroma cacao TCM_019165 N 0.740
LjT15P09.140.nc Lotus japonicus LjT15P09.140.nc N 0.738
LjT40K11.90.nc Lotus japonicus LjT40K11.90.nc N 0.738
GLYMA11G33720 Glycine max GLYMA11G33720 I 0.737
Gorai.001G089400 Gossypium raimondii Gorai.001G089400 I 0.736
SapurV1A.0102s0220 Salix purpurea SapurV1A.0102s0220 N 0.735
GRMZM2G144744 Zea mays GRMZM2G144744 N 0.733
Cucsa.006260 Cucumis sativus Cucsa.006260 N 0.732
Cla020062 Citrullus lanatus Cla020062 N 0.732
evm.TU.supercontig_116.43 Carica papaya evm.TU.supercontig_116.43 I 0.731
Ca_13295 Cicer arietinum Ca_13295 I 0.729
Eucgr.J01594 Eucalyptus grandis Eucgr.J01594 I 0.729
Lus10017626.g Linum usitatissimum Lus10017626.g N 0.715
Lus10033583.g Linum usitatissimum Lus10033583.g N 0.712
mgf025772m Mimulus guttatus mgf025772m N 0.710