Cla003996 (Citrullus lanatus)
GRAS

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03514 (GRAS) IPR005202 Cla003996 T201907_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Cla003996 GRAS 218 577

Links

Other GRAS family TFs
Other Citrullus lanatus TFs

74 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cucsa.280310 Cucumis sativus Cucsa.280310 N 0.978
PK14700.1 Cannabis sativa PK14700.1 N 0.882
29692.m000540 Ricinus communis 29692.m000540 N 0.874
cassava15077.m1 Manihot esculenta cassava15077.m1 N 0.874
POPTR_0008s13090 Populus trichocarpa POPTR_0008s13090 N 0.866
POPTR_0010s12080 Populus trichocarpa POPTR_0010s12080 N 0.866
evm.TU.supercontig_2.240 Carica papaya evm.TU.supercontig_2.240 I 0.866
Gorai.002G177000 Gossypium raimondii Gorai.002G177000 N 0.860
TCM_010965 Theobroma cacao TCM_010965 N 0.857
cassava14484.m1 Manihot esculenta cassava14484.m1 N 0.854
Pm006304 Prunus mume Pm006304 N 0.852
SapurV1A.0405s0090 Salix purpurea SapurV1A.0405s0090 N 0.852
PRUPE_ppa005944mg Prunus persica PRUPE_ppa005944mg N 0.846
SapurV1A.0015s0210 Salix purpurea SapurV1A.0015s0210 N 0.843
Bostr.7903s0021 Boechera stricta Bostr.7903s0021 N 0.840
Cagra.2235s0013 Capsella grandiflora Cagra.2235s0013 N 0.838
Thhalv10005482m.g Eutrema salsugineum Thhalv10005482m.g N 0.838
Eucgr.G02163 Eucalyptus grandis Eucgr.G02163 N 0.832
RGA Arabidopsis thaliana AT2G01570 N 0.829
GAI1 Vitis vinifera VIT_01s0011g05260 N 0.826
Thhalv10007323m.g Eutrema salsugineum Thhalv10007323m.g N 0.826
Bo7g078550 Brassica oleracea Bo7g078550 N 0.824
Bra024875 Brassica rapa Bra024875 N 0.824
RGA1 Arabidopsis lyrata fgenesh2_kg.5__65__AT2G01570.1 N 0.821
MDP0000237978 Malus domestica MDP0000237978 N 0.821
Bostr.7128s0107 Boechera stricta Bostr.7128s0107 N 0.818
Cagra.3501s0003 Capsella grandiflora Cagra.3501s0003 N 0.818
Carubv10008833m.g Capsella rubella Carubv10008833m.g N 0.818
GAI Arabidopsis thaliana AT1G14920 N 0.812
GAI Arabidopsis lyrata fgenesh2_kg.1__1634__AT1G14920.1 N 0.812
Ca_05046 Cicer arietinum Ca_05046 N 0.810
GLYMA05G27190 Glycine max GLYMA05G27190 N 0.804
orange1.1g043131m.g Citrus sinensis orange1.1g043131m.g N 0.804
Carubv10018534m.g Capsella rubella Carubv10018534m.g N 0.801
Ciclev10017466m.g Citrus clementina Ciclev10017466m.g N 0.794
Pm014329 Prunus mume Pm014329 I 0.790
GLYMA08G10140 Glycine max GLYMA08G10140 N 0.787
mgf008289m Mimulus guttatus mgf008289m N 0.787
VIT_14s0006g00640 Vitis vinifera VIT_14s0006g00640 I 0.782
cassava6237.valid.m1 Manihot esculenta cassava6237.valid.m1 I 0.782
MDP0000669451 Malus domestica MDP0000669451 I 0.782
PRUPE_ppa003206mg Prunus persica PRUPE_ppa003206mg I 0.779
orange1.1g008153m.g Citrus sinensis orange1.1g008153m.g N 0.776
POPTR_0004s08890 Populus trichocarpa POPTR_0004s08890 I 0.773
Ciclev10011367m.g Citrus clementina Ciclev10011367m.g N 0.773
GLYMA18G04500 Glycine max GLYMA18G04500 I 0.770
AMTR_s00010p00148880 Amborella trichopoda AMTR_s00010p00148880 N 0.768
POPTR_0005s14540 Populus trichocarpa POPTR_0005s14540 I 0.767
28677.m000055 Ricinus communis 28677.m000055 N 0.762
PGSC0003DMG400015692 Solanum tuberosum PGSC0003DMG400015692 N 0.759
Solyc11g011260.1 Solanum lycopersicum Solyc11g011260.1 N 0.759
Cla020062 Citrullus lanatus Cla020062 N 0.759
GLYMA11G33720 Glycine max GLYMA11G33720 I 0.756
Bo9g070200 Brassica oleracea Bo9g070200 N 0.753
Eucgr.J01594 Eucalyptus grandis Eucgr.J01594 I 0.753
Gorai.001G089400 Gossypium raimondii Gorai.001G089400 I 0.753
MTR_3g065980 Medicago truncatula MTR_3g065980 N 0.752
SapurV1A.0102s0220 Salix purpurea SapurV1A.0102s0220 N 0.751
Aquca_091_00032 Aquilegia coerulea Aquca_091_00032 N 0.748
evm.TU.supercontig_116.43 Carica papaya evm.TU.supercontig_116.43 I 0.748
Lus10017626.g Linum usitatissimum Lus10017626.g N 0.745
Cucsa.006260 Cucumis sativus Cucsa.006260 N 0.742
LjT15P09.140.nc Lotus japonicus LjT15P09.140.nc N 0.741
LjT40K11.90.nc Lotus japonicus LjT40K11.90.nc N 0.741
Lus10033583.g Linum usitatissimum Lus10033583.g N 0.740
Ca_13295 Cicer arietinum Ca_13295 I 0.734
TCM_019165 Theobroma cacao TCM_019165 N 0.728
Bra017443 Brassica rapa Bra017443 N 0.714
Aquca_002_01300 Aquilegia coerulea Aquca_002_01300 N 0.714
mgf025772m Mimulus guttatus mgf025772m N 0.709
LPERR03G26000 Leersia perrieri LPERR03G26000 N 0.700
Si039400m.g Setaria italica Si039400m.g N 0.700
Pavir.Ia00840 Panicum virgatum Pavir.Ia00840 N 0.700
Pavir.Ib04357 Panicum virgatum Pavir.Ib04357 N 0.700