CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.J22109
(
Panicum virgatum
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Pavir.J22109
T203069_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J22109.1.p
GRAS
113
485
LSTLLIHCAQAVATDNRRGAAELLRQIRQHSSPRGDATQRLAHVFAEGLEARLAGSGSQLYASTVAERVPVTEYLKACWLYLAACCFEMVAFKFSIAAICNAAAGRKKLHIVDYGVSYGFQWPTLLRCLANREGGPPEVRITGIDLPQPGFRPAAQIEATGRRLSNCARQFGVAFKFRGIAAKWETIGADDLDIDRDEVLIVNSVRFQNLMDEGADIDSPSPRDIVLGNIRKMRPDMFILFTTNVLSGASFFLTRFREALFYYSAMFDMLDATAPRDSHQRLLVERGLFRPCALNAVACEGSDRVERPETYKQWQARSQRAGLKQLPLDPDIVRDVREMVREQYHKDFAIDVDHHWLLEGWKGRVLYAMSTWV
Links
Other
GRAS
family TFs
Other
Panicum virgatum
TFs
7 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GRMZM2G073779
Zea mays
GRMZM2G073779
N
0.759
Sb05g027750
Sorghum bicolor
Sb05g027750
N
0.764
TRAES3BF026400020CFD_g
Triticum aestivum
TRAES3BF026400020CFD_g
N
0.737
Traes_4DS_050789E2A
Triticum aestivum
Traes_4DS_050789E2A
N
0.825
Traes_5DL_E275797CE
Triticum aestivum
Traes_5DL_E275797CE
N
0.763
Pavir.Ha00318
Panicum virgatum
Pavir.Ha00318
N
0.765
Pavir.Hb00043
Panicum virgatum
Pavir.Hb00043
N
0.724