CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Pavir.Ha00318
(
Panicum virgatum
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Pavir.Ha00318
T203002_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ha00318.1.p
GRAS
221
594
LSTLLIHCAQAVATDNRRSATELLRQIKQHSSPRGDATQRLANCFAEGLEARLAGSGSQVYKSLMAERISVVEYLKAYQVYLAASCFKMMAFKFSNMTIAKVIAGRKKVHIVDYGIQYGFQWPSLLGYMATLKGGPPQVRITGIDLPQPGFRPASRIEETGCRLSNCASQLGVPFKFHSITARWETIGVDDLNIDPDEVLIVNSIRNFGNLMDEGVDIDSPSPRDVVLGNIRKMKPDAFILFVMNASYSAPFFVTRFREALFFHSAIFDMLDATAPRDNHQRFLVERGLFRKCALNVVACEGLDRVERPETYKQWQVRNHRAGLRQLPLDPDVVKAVRENVRNLYHKDFVIDVDHQWLLEGWKGRILYAMSTWD
Links
Other
GRAS
family TFs
Other
Panicum virgatum
TFs
12 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Traes_4DS_050789E2A
Triticum aestivum
Traes_4DS_050789E2A
N
0.850
Sb05g027750
Sorghum bicolor
Sb05g027750
N
0.846
Pavir.Hb00043
Panicum virgatum
Pavir.Hb00043
N
0.822
GRMZM2G073779
Zea mays
GRMZM2G073779
N
0.803
Traes_5DL_E275797CE
Triticum aestivum
Traes_5DL_E275797CE
N
0.789
Pavir.J22109
Panicum virgatum
Pavir.J22109
N
0.765
TRAES3BF026400020CFD_g
Triticum aestivum
TRAES3BF026400020CFD_g
N
0.763
Sb02g034550
Sorghum bicolor
Sb02g034550
N
0.722
Sb05g027783
Sorghum bicolor
Sb05g027783
N
0.719
Pavir.Hb00042
Panicum virgatum
Pavir.Hb00042
N
0.711
Pavir.Ha00317
Panicum virgatum
Pavir.Ha00317
N
0.705
GRMZM2G159475
Zea mays
GRMZM2G159475
N
0.704