CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Thhalv10013016m.g
(
Eutrema salsugineum
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Thhalv10013016m.g
T203204_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Thhalv10013016m
GRAS
227
601
LRSLLTQCAQAVASFDQRRATEKLKEIRSNSSSSGDGIQRMAFYFAEALEARITGIISPPVSTAFPSSTTSMVDILKAYKLFVHACPIYVADYFAANKSIYELALKATKLHIIDFGVLYGFQWPCLLLALSKRPGGPPMLRVTGIELPQSGFRPSDRVEETGRRLKRFCDMFNVPFEFNFIAKKWESISLDEITINPGETTVVNCIHRLQYTPDETVSLNSPRDTVLKLFRDINPDLFVFAEINGTYNSPFFMTRFREALFHFSSLFDMFDTTIQAEDEYKNRALLERELLVRDAMSVISSEGAERFARPETYKQWQVRILRAGFKPATISKRIMKEAREIVRKNYHKDFLIDSDNHWMLQGWKGRVIYAFSCWK
Links
Other
GRAS
family TFs
Other
Eutrema salsugineum
TFs
17 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
fgenesh2_kg.8__1893__AT5G59450.1
Arabidopsis lyrata
fgenesh2_kg.8__1893__AT5G59450.1
N
0.922
Thhalv10002455m.g
Eutrema salsugineum
Thhalv10002455m.g
N
0.759
Carubv10028208m.g
Capsella rubella
Carubv10028208m.g
N
0.924
Carubv10016909m.g
Capsella rubella
Carubv10016909m.g
N
0.722
Cagra.1317s0069
Capsella grandiflora
Cagra.1317s0069
N
0.924
Cagra.0448s0009
Capsella grandiflora
Cagra.0448s0009
N
0.724
Bostr.26833s0299
Boechera stricta
Bostr.26833s0299
N
0.927
Bostr.18473s0299
Boechera stricta
Bostr.18473s0299
N
0.743
scaffold_501562.1
Arabidopsis lyrata
scaffold_501562.1
N
0.745
SCL30
Arabidopsis thaliana
AT3G46600
N
0.751
Bra033813
Brassica rapa
Bra033813
N
0.741
Bra002564
Brassica rapa
Bra002564
N
0.759
Bo9g139410
Brassica oleracea
Bo9g139410
N
0.927
Bo3g132720
Brassica oleracea
Bo3g132720
N
0.709
Bo3g132680
Brassica oleracea
Bo3g132680
N
0.725
Bo1g070830
Brassica oleracea
Bo1g070830
N
0.734
SCL11
Arabidopsis thaliana
AT5G59450
N
0.914