AMTR_s00004p00265170 (Amborella trichopoda)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 AMTR_s00004p00265170 T204367_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATML1
M02048_2.00 		Arabidopsis thaliana
NNHNRHYRNN
NNYRDYNDNN		 PBM
Weirauch et al.(2014)
pTH8203 		0.827 0.895
ATML1
M10626_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ML1_01 		0.827 0.895
PDF2
M06921_2.00 		Arabidopsis thaliana
WNVGAATATTCYHTN
NADRGAATATTCBNW		 Dap-seq
OMalley et al.(2016)
PDF2_col 		0.815 0.877
PDF2
M10625_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PDF2_01 		0.815 0.877
HDG1
M06917_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_col100_a 		0.808 0.719
HDG1
M06918_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_colamp_a 		0.808 0.719
PK24181.1
M01252_2.00 		Cannabis sativa
NNNNNNNHDH
DHDNNNNNNN		 PBM
Lambert et al.(2019)
pTH11300 		0.804 0.754
HDG11
M02039_2.00 		Arabidopsis thaliana
DCATTWAWKD
HMWTWAATGH		 PBM
Weirauch et al.(2014)
pTH7664 		0.804 0.737
HDG11
M06904_2.00 		Arabidopsis thaliana
DCATTWAWTRH
DYAWTWAATGH		 Dap-seq
OMalley et al.(2016)
EDT1_col 		0.804 0.737
HDG9
M10628_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG9_01 		0.802 0.649
ANL2
M02046_2.00 		Arabidopsis thaliana
NCATTWATKNN
NNMATWAATGN		 PBM
Weirauch et al.(2014)
pTH8244 		0.792 0.754
ANL2
M06919_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_col_a 		0.792 0.754
ANL2
M06920_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_colamp_a 		0.792 0.754
HDG7
M06931_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG7_col_a 		0.750 0.684
HDG7
M10629_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG7_01 		0.750 0.684
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERM93749 Homeodomain 50 107

Links

Other Homeodomain family TFs
Other Amborella trichopoda TFs

618 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LYS14 Saccharomyces cerevisiae YDR034C D
TBLA_0I01890 Tetrapisispora blattae TBLA_0I01890 I
SAKL0D03586g Lachancea kluyveri SAKL0D03586g I
3859_YDR034C Saccharomyces paradoxus 3859_YDR034C I
3344_Multiple Saccharomyces mikatae 3344_Multiple I
21342_YDR034C Saccharomyces bayanus 21342_YDR034C I
ZYRO0A03058g Zygosaccharomyces rouxii ZYRO0A03058g I
ZBAI_06624 Zygosaccharomyces bailii ZBAI_06624 I
ZBAI_04585 Zygosaccharomyces bailii ZBAI_04585 I
TPHA_0M01040 Tetrapisispora phaffii TPHA_0M01040 I
AACERI_AaceriABL099W Saccharomycetaceae sp ashbya aceri AACERI_AaceriABL099W I
SU7_0595 Saccharomyces arboricola SU7_0595 I
SKUD_203807 Saccharomyces kudriavzevii SKUD_203807 I
NDAI_0A05750 Naumovozyma dairenensis NDAI_0A05750 I
Kpol_1061p11 Vanderwaltozyma polyspora Kpol_1061p11 I
KNAG_0H01260 Kazachstania naganishii KNAG_0H01260 I
KLLA0_F04213g Kluyveromyces lactis KLLA0_F04213g I
KAFR_0E01250 Kazachstania africana KAFR_0E01250 I
Ecym_5131 Eremothecium cymbalariae Ecym_5131 I