CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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3859_YDR034C
(
Saccharomyces paradoxus
)
Zinc cluster
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00172 (Zn_clus)
IPR001138
3859_YDR034C
T390847_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LYS14
M00080_2.00
Saccharomyces cerevisiae
NNNNGVDWHN
NDWHBCNNNN
PBM
Badis et al.(2008)
LYS14_2065
0.683
1.000
LYS14
M01574_2.00
Saccharomyces cerevisiae
NNGGRAWNN
NNWTYCCNN
PBM
Zhu et al.(2009)
Lys14
0.683
1.000
LYS14
M07507_2.00
Saccharomyces cerevisiae
VCGGAATT
AATTCCGB
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0325.1
0.683
1.000
LYS14
M08651_2.00
Saccharomyces cerevisiae
WWTTCCRVYGGRAWH
DWTYCCRBYGGAAWW
Misc
DeBoer et al.(2011)
YDR034C_133
0.683
1.000
LYS14
M08652_2.00
Saccharomyces cerevisiae
DNNVHVCGGAATTTNKNNNN
NNNNMNAAATTCCGBDBNNH
Misc
DeBoer et al.(2011)
YDR034C_865
0.683
1.000
For this family, TFs with SR scores >
0.537
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
3859_YDR034C
Zinc cluster
145
184
NGCSECKRRRMKCDETKPTCWQCARLNRQCVYVLNPKNKK
Links
Other
Zinc cluster
family TFs
Other
Saccharomyces paradoxus
TFs
19 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SKUD_203807
Saccharomyces kudriavzevii
SKUD_203807
I
0.683
SU7_0595
Saccharomyces arboricola
SU7_0595
I
0.683
LYS14
Saccharomyces cerevisiae
YDR034C
D
0.683
21342_YDR034C
Saccharomyces bayanus
21342_YDR034C
I
0.654
3344_Multiple
Saccharomyces mikatae
3344_Multiple
I
0.654
KLLA0_F04213g
Kluyveromyces lactis
KLLA0_F04213g
I
0.582
ZBAI_04585
Zygosaccharomyces bailii
ZBAI_04585
I
0.582
ZBAI_06624
Zygosaccharomyces bailii
ZBAI_06624
I
0.582
ZYRO0A03058g
Zygosaccharomyces rouxii
ZYRO0A03058g
I
0.582
KAFR_0E01250
Kazachstania africana
KAFR_0E01250
I
0.574
NDAI_0A05750
Naumovozyma dairenensis
NDAI_0A05750
I
0.574
Kpol_1061p11
Vanderwaltozyma polyspora
Kpol_1061p11
I
0.557
TPHA_0M01040
Tetrapisispora phaffii
TPHA_0M01040
I
0.557
AACERI_AaceriABL099W
Saccharomycetaceae sp ashbya aceri
AACERI_AaceriABL099W
I
0.549
CAGL0K11902g
Candida glabrata
CAGL0K11902g
I
0.549
Ecym_5131
Eremothecium cymbalariae
Ecym_5131
I
0.549
KNAG_0H01260
Kazachstania naganishii
KNAG_0H01260
I
0.549
TBLA_0I01890
Tetrapisispora blattae
TBLA_0I01890
I
0.549
SAKL0D03586g
Lachancea kluyveri
SAKL0D03586g
I
0.549