AMTR_s00024p00249550 (Amborella trichopoda)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 AMTR_s00024p00249550 T204380_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HAT3
M00728_2.00 		Arabidopsis thaliana
DTGATTRV
BYAATCAH		 PBM
Chang et al.(2013)
pTH7400 		0.795 0.772
ATHB-4
M01065_2.00 		Arabidopsis thaliana
NBMTGCATRNN
NNYATGCAKVN		 PBM
Sullivan et al.(2014)
pTH8184 		0.795 0.754
ATHB-4
M02042_2.00 		Arabidopsis thaliana
NNWTNATTRN
NYAATNAWNN		 PBM
Weirauch et al.(2014)
pTH8667 		0.795 0.754
HAT2
M06929_2.00 		Arabidopsis thaliana
NHAATGATTRN
NYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT2_colamp_a 		0.762 0.737
HAT2
M06930_2.00 		Arabidopsis thaliana
WNYAATCATWD
HWATGATTRNW		 Dap-seq
OMalley et al.(2016)
HAT2_col_v31 		0.762 0.737
HAT1
M02047_2.00 		Arabidopsis thaliana
NMATGATTRN
NYAATCATKN		 PBM
Weirauch et al.(2014)
pTH8107 		0.760 0.702
HAT1
M06922_2.00 		Arabidopsis thaliana
NHAATGATTRNNWDW
WHWNNYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT1_col_a 		0.760 0.702
HAT1
M06923_2.00 		Arabidopsis thaliana
NYAATCATTDN
NHAATGATTRN		 Dap-seq
OMalley et al.(2016)
HAT1_colamp_a 		0.760 0.702
HAT22
M06926_2.00 		Arabidopsis thaliana
NNYAATCATT
AATGATTRNN		 Dap-seq
OMalley et al.(2016)
HAT22_col_a 		0.746 0.737
ATHB-X
M06902_2.00 		Arabidopsis thaliana
HHAATRATTRN
NYAATYATTDD		 Dap-seq
OMalley et al.(2016)
ATHB18_col_a 		0.732 0.737
ATHB-X
M06903_2.00 		Arabidopsis thaliana
NYAATGATTRV
BYAATCATTRN		 Dap-seq
OMalley et al.(2016)
ATHB18_colamp_a 		0.732 0.737
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN11328 Homeodomain 63 119

Links

Other Homeodomain family TFs
Other Amborella trichopoda TFs

693 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AUEXF2481DRAFT_26059 Aureobasidium subglaciale AUEXF2481DRAFT_26059 I 0.000
BAUCODRAFT_212345 Baudoinia compniacensis BAUCODRAFT_212345 I 0.000
CAGL0C01551g Candida glabrata CAGL0C01551g I 0.000
DOTSEDRAFT_23295 Dothistroma septosporum DOTSEDRAFT_23295 I 0.000
HPODL_01870 Ogataea parapolymorpha HPODL_01870 I 0.000
Kpol_1036p56 Vanderwaltozyma polyspora Kpol_1036p56 I 0.000
KUCA_T00004797001 Kuraishia capsulata KUCA_T00004797001 I 0.000
M437DRAFT_13662 Aureobasidium melanogenum M437DRAFT_13662 I 0.000
M438DRAFT_396225 Aureobasidium pullulans M438DRAFT_396225 I 0.000
Mycgr3G91768 Zymoseptoria tritici Mycgr3G91768 I 0.000
PAS_chr3_0590 Komagataella pastoris PAS_chr3_0590 I 0.000
SEPMUDRAFT_148705 Sphaerulina musiva SEPMUDRAFT_148705 I 0.000
fgenesh1_pg.C_chr_3000478 Mycosphaerella graminicola fgenesh1_pg.C_chr_3000478 I 0.000
XP_002492817.1 Pichia pastoris XP_002492817.1 I 0.000