Bo3g181130 (Brassica oleracea)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Bo3g181130 T204910_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.863 0.982
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.863 0.982
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.857 0.893
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.857 0.893
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.857 0.893
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo3g181130.1 Homeodomain 17 76

Links

Other Homeodomain family TFs
Other Brassica oleracea TFs

335 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT1G06070 Arabidopsis thaliana AT1G06070 D
PK20942.1 Cannabis sativa PK20942.1 D
Eucgr.D00737 Eucalyptus grandis Eucgr.D00737 I
Cla022204 Citrullus lanatus Cla022204 I
Pm007522 Prunus mume Pm007522 I
cassava32399.m1 Manihot esculenta cassava32399.m1 I
cassava43164.valid.m1 Manihot esculenta cassava43164.valid.m1 I
Cucsa.062530 Cucumis sativus Cucsa.062530 I
Cucsa.251880 Cucumis sativus Cucsa.251880 I
Bostr.25219s0353 Boechera stricta Bostr.25219s0353 I
Cagra.1671s0236 Capsella grandiflora Cagra.1671s0236 I
Carubv10008993m.g Capsella rubella Carubv10008993m.g I
Ca_02692 Cicer arietinum Ca_02692 I
gene23487-v1.0-hybrid Fragaria vesca gene23487-v1.0-hybrid I
Gorai.005G015900 Gossypium raimondii Gorai.005G015900 I
Gorai.006G229500 Gossypium raimondii Gorai.006G229500 I
Gorai.011G140400 Gossypium raimondii Gorai.011G140400 I
Lus10008150.g Linum usitatissimum Lus10008150.g I
Lus10019376.g Linum usitatissimum Lus10019376.g I
MDP0000234166 Malus domestica MDP0000234166 I
Thhalv10007692m.g Eutrema salsugineum Thhalv10007692m.g I
chr3.CM0106.340.nd Lotus japonicus chr3.CM0106.340.nd I
OGLUM09G17020 Oryza glumaepatula OGLUM09G17020 I
Bo5g007170 Brassica oleracea Bo5g007170 I
Bo8g005940 Brassica oleracea Bo8g005940 I
Bra015471 Brassica rapa Bra015471 I
Bra030637 Brassica rapa Bra030637 I
GLYMA11G13510 Glycine max GLYMA11G13510 I
GLYMA12G05520 Glycine max GLYMA12G05520 I
GLYMA13G42030 Glycine max GLYMA13G42030 I
GLYMA15G03350 Glycine max GLYMA15G03350 I
MLOC_64781 Hordeum vulgare MLOC_64781 I
OB09G23080 Oryza brachyantha OB09G23080 I
Cla022201 Citrullus lanatus Cla022201 I
OMERI09G12160 Oryza meridionalis OMERI09G12160 I
RF2A Oryza sativa OS09G0516200 I
POPTR_0017s05610 Populus trichocarpa POPTR_0017s05610 I
scaffold_100594.1 Arabidopsis lyrata scaffold_100594.1 I
Solyc06g053350.2 Solanum lycopersicum Solyc06g053350.2 I
TCM_019998 Theobroma cacao TCM_019998 I
Traes_7DS_47B5A7FFF Triticum aestivum Traes_7DS_47B5A7FFF I
TRIUR3_16287 Triticum urartu TRIUR3_16287 I
VIT_05s0102g01120 Vitis vinifera VIT_05s0102g01120 I