CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Bo4g149670 *(Brassica oleracea)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00046 (Homeobox)	IPR001356	Bo4g149670	T204921_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ATHB-6 M02040_2.00	Arabidopsis thaliana	HATNATTDN	NHAATNATD	PBM Weirauch et al.(2014) pTH7670	0.814	0.965
ATHB-6 M06909_2.00	Arabidopsis thaliana	NNNHATKATTR	YAATMATDNNN	Dap-seq OMalley et al.(2016) ATHB6_col_a	0.814	0.965
ATHB-6 M06910_2.00	Arabidopsis thaliana	NCAATAATTRN	NYAATTATTGN	Dap-seq OMalley et al.(2016) ATHB6_colamp_a	0.814	0.965
ATHB-16 M02050_2.00	Arabidopsis thaliana	YAATMATT	AATKATTR	PBM Weirauch et al.(2014) pTH7270	0.811	0.895
estExt_gwp_gw1.C_70211 M02220_2.00	Physcomitrella patens	HMATNANDNN	NNHNTNATKD	PBM Weirauch et al.(2014) pTH8489	0.805	0.807
HAT5 M06914_2.00	Arabidopsis thaliana	NHAATAATTDW	WHAATTATTDN	Dap-seq OMalley et al.(2016) HAT5_col_a	0.793	0.772
HAT5 M06915_2.00	Arabidopsis thaliana	WNYAATAATTRWDN	NHWYAATTATTRNW	Dap-seq OMalley et al.(2016) HAT5_colamp_a	0.793	0.772
HAT5 M02683_2.00	Arabidopsis thaliana	SCAATAATTNNV	BNNAATTATTGS	SELEX Mathelier et al.(2014) MA0008.2	0.793	0.772
HAT5 M10624_2.00	Arabidopsis thaliana	YSCAATAATTNNVN	NBNNAATTATTGSR	Transfac Matys et al.(2006) P$ATHB1_01	0.793	0.772
ATHB-5 M06932_2.00	Arabidopsis thaliana	NYAATMATTND	HNAATKATTRN	Dap-seq OMalley et al.(2016) ATHB5_col_a	0.788	0.860
ATHB-5 M06933_2.00	Arabidopsis thaliana	NYAATMATTN	NAATKATTRN	Dap-seq OMalley et al.(2016) ATHB5_colamp_a	0.788	0.860
ATHB-5 M02684_2.00	Arabidopsis thaliana	CAATVATTGVVSV	BSBBCAATBATTG	SELEX Mathelier et al.(2014) MA0110.2	0.788	0.860
ATHB-5 M10630_2.00	Arabidopsis thaliana	CAATVATTG	CAATBATTG	Transfac Matys et al.(2006) P$ATHB5_01	0.788	0.860
ATHB-13 M06900_2.00	Arabidopsis thaliana	HYAATAATTDD	HHAATTATTRD	Dap-seq OMalley et al.(2016) ATHB13_col_a	0.781	0.772
ATHB-13 M06901_2.00	Arabidopsis thaliana	NYAATAATTRW	WYAATTATTRN	Dap-seq OMalley et al.(2016) ATHB13_colamp_a	0.781	0.772
ATHB-21 M06907_2.00	Arabidopsis thaliana	NNWHCAATWATTDN	NHAATWATTGDWNN	Dap-seq OMalley et al.(2016) ATHB21_col_a	0.715	0.649
ATHB-21 M06908_2.00	Arabidopsis thaliana	WWDDNNNHAATWATTGDTNN	NNAHCAATWATTDNNNHHWW	Dap-seq OMalley et al.(2016) ATHB21_colamp_a	0.715	0.649
HB-5 M06924_2.00	Arabidopsis thaliana	NNAHCAATWATTKDNNNHWWH	DWWDNNNHMAATWATTGDTNN	Dap-seq OMalley et al.(2016) ATHB40_col_a	0.714	0.632
HB-5 M06925_2.00	Arabidopsis thaliana	HHAATWATTGDWNN	NNWHCAATWATTDD	Dap-seq OMalley et al.(2016) ATHB40_colamp_a	0.714	0.632
ATHB-53 M06934_2.00	Arabidopsis thaliana	HMAATAATTRD	HYAATTATTKD	Dap-seq OMalley et al.(2016) ATHB53_col_a	0.709	0.614
ATHB-53 M06935_2.00	Arabidopsis thaliana	NNWHCAATWATTDDN	NHHAATWATTGDWNN	Dap-seq OMalley et al.(2016) ATHB53_colamp_a	0.709	0.614
PK20392.1 M01250_2.00	Cannabis sativa	NHAATMATDN	NHATKATTDN	PBM Lambert et al.(2019) pTH11331	0.638	0.737
PK20392.1 M01251_2.00	Cannabis sativa	NHAATMATDN	NHATKATTDN	PBM Lambert et al.(2019) pTH11332	0.638	0.737
ATHB-20 M06912_2.00	Arabidopsis thaliana	HYAATAATTRD	HYAATTATTRD	Dap-seq OMalley et al.(2016) ATHB20_col_a	0.622	0.737
ATHB-20 M06913_2.00	Arabidopsis thaliana	HYAATMATTRD	HYAATKATTRD	Dap-seq OMalley et al.(2016) ATHB20_colamp_a	0.622	0.737
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Bo4g149670.1	Homeodomain	53	109	TEKKRRLSINQVKALEKNFELENKLEPERKVKLAQELGLQTRQVAVWFQNRRARWKT

Links
Other Homeodomain family TFs
Other *Brassica oleracea* TFs

784 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
BGIBMGA010110	Bombyx mori	BGIBMGA010110	I	0.000
ASTEI00079	Anopheles stephensi	ASTEI00079	I	0.000
AQUA009305	Anopheles quadriannulatus	AQUA009305	I	0.000
AMIN000723	Anopheles minimus	AMIN000723	I	0.000
AMEM015931	Anopheles merus	AMEM015931	I	0.000
AMAM019778	Anopheles maculatus	AMAM019778	I	0.000
AFUN009864	Anopheles funestus	AFUN009864	I	0.000
AFAF011208	Anopheles farauti	AFAF011208	I	0.000
AEPI002385	Anopheles epiroticus	AEPI002385	I	0.000
ADIR002761	Anopheles dirus	ADIR002761	I	0.000
ACUA025512	Anopheles culicifacies	ACUA025512	I	0.000
ACHR000067	Anopheles christyi	ACHR000067	I	0.000
AGAP002902	Anopheles gambiae	AGAP002902	I	0.000
DAPPUDRAFT_304115	Daphnia pulex	DAPPUDRAFT_304115	I	0.000
HMEL002203	Heliconius melpomene	HMEL002203	I	0.000
KGM_12572	Danaus plexippus	KGM_12572	I	0.000
MCINX014520	Melitaea cinxia	MCINX014520	I	0.000
Alligator_sinensis_CCG001823.1	Alligator sinensis	Alligator_sinensis_CCG001823.1	I	0.000
SMU15015494	Schmidtea mediterranea	SMU15015494	I	0.000
AARA004719	Anopheles arabiensis	AARA004719	I	0.000
AATE010695	Anopheles atroparvus	AATE010695	I	0.000
ACOM037505	Anopheles coluzzii	ACOM037505	I	0.000
ECANG7_08262	Echinococcus canadensis	ECANG7_08262	N	0.000
HmN_000727600	Hymenolepis microstoma	HmN_000727600	N	0.000
HNAJ_0000282001	Hymenolepis nana	HNAJ_0000282001	N	0.000
MCOS_0000775001	Mesocestoides corti	MCOS_0000775001	N	0.000
SSLN_0001332901	Schistocephalus solidus	SSLN_0001332901	N	0.000
TsM_000635600	Taenia solium	TsM_000635600	N	0.000

Bo4g149670 (Brassica oleracea) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

784 Related TFs

Bo4g149670 **(Brassica oleracea)
Homeodomain**