Bra007637 (Brassica rapa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Bra007637 T205056_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-12
M00865_2.00 		Arabidopsis thaliana
NNNNNNNN
NNNNNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATHB12 		0.867 0.965
ATHB-12
M02045_2.00 		Arabidopsis thaliana
BHWWWWWWDV
BHWWWWWWDV		 PBM
Weirauch et al.(2014)
pTH7207 		0.867 0.965
ATHB-7
M02043_2.00 		Arabidopsis thaliana
NHWTGATTGN
NCAATCAWDN		 PBM
Weirauch et al.(2014)
pTH8090 		0.666 0.860
ATHB-7
M06911_2.00 		Arabidopsis thaliana
NHYCAATCATTSW
WSAATGATTGRDN		 Dap-seq
OMalley et al.(2016)
ATHB7_col_a 		0.666 0.860
Q39944_HELAN
M10802_2.00 		Helianthus annuus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HAHB4_01 		0.630 0.579
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.618 0.614
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.618 0.614
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra007637.1-P Homeodomain 30 86

Links

Other Homeodomain family TFs
Other Brassica rapa TFs

113 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cflo_01607--XP_001123059.1_APIME Camponotus floridanus Cflo_01607--XP_001123059.1_APIME N
cers2a Takifugu rubripes ENSTRUG00000012292 N
ENSXMAG00000010322 Xiphophorus maculatus ENSXMAG00000010322 N
HelroG82517 Helobdella robusta HelroG82517 N
KGM_16996 Danaus plexippus KGM_16996 N
L798_00373 Zootermopsis nevadensis L798_00373 N
LotgiG226091 Lottia gigantea LotgiG226091 N
MCINX005367 Melitaea cinxia MCINX005367 N
RPRC008736 Rhodnius prolixus RPRC008736 N
SINV20227 Solenopsis invicta SINV20227 N
SINV24013 Solenopsis invicta SINV24013 N
Afo_R008528 Aptenodytes forsteri Afo_R008528 N
Alligator_sinensis_CCG000180.1 Alligator sinensis Alligator_sinensis_CCG000180.1 N
Alligator_sinensis_CCG004678.1 Alligator sinensis Alligator_sinensis_CCG004678.1 N
CERS5 Takifugu rubripes ENSTRUG00000010435 N
Cmyd_10017930 Chelonia mydas Cmyd_10017930 N
Hsal_14209--XP_001123059.1_APIME Harpegnathos saltator Hsal_14209--XP_001123059.1_APIME N
Myotis_brandtii_Lass6_10034918 Myotis brandtii Myotis_brandtii_Lass6_10034918 N
e_gw.479.83.1 Branchiostoma floridae e_gw.479.83.1 N
estExt_gwp.C_860189 Branchiostoma floridae estExt_gwp.C_860189 N
Ocbimv22016239m.g Octopus bimaculoides Ocbimv22016239m.g N
AAL89720 Xenopus laevis AAL89720 N
CLEC001936 Cimex lectularius CLEC001936 N
LDEC003623 Leptinotarsa decemlineata LDEC003623 N
cers3.L Xenopus laevis XB-GENE-6251639 N
cers5.S Xenopus laevis XB-GENE-866438 N
AFAF012002 Anopheles farauti AFAF012002 N
AMEM008456 Anopheles merus AMEM008456 N
ENSMICG00000017321 Microcebus murinus ENSMICG00000017321 N
ACYPI008958 Acyrthosiphon pisum ACYPI008958 N
AGAP001761 Anopheles gambiae AGAP001761 N
DAPPUDRAFT_220106 Daphnia pulex DAPPUDRAFT_220106 N
ENSAMXG00000012483 Astyanax mexicanus ENSAMXG00000012483 N
lag1-like1 Ciona intestinalis ENSCING00000006059 N
ENSCSAVG00000009299 Ciona savignyi ENSCSAVG00000009299 N
cers4b Danio rerio ENSDARG00000018619 N
cers3b Danio rerio ENSDARG00000036337 N
ENSGACG00000002760 Gasterosteus aculeatus ENSGACG00000002760 N
ENSGMOG00000018099 Gadus morhua ENSGMOG00000018099 N
ENSLOCG00000004390 Lepisosteus oculatus ENSLOCG00000004390 N
ENSMGAG00000017003 Meleagris gallopavo ENSMGAG00000017003 N
ENSMICG00000014767 Microcebus murinus ENSMICG00000014767 N
AAEL009092 Aedes aegypti AAEL009092 N
ENSMODG00000004533 Monodelphis domestica ENSMODG00000004533 N
ENSMODG00000004916 Monodelphis domestica ENSMODG00000004916 N
ENSOARG00000017904 Ovis aries ENSOARG00000017904 N
ENSONIG00000017329 Oreochromis niloticus ENSONIG00000017329 N
ENSONIG00000019701 Oreochromis niloticus ENSONIG00000019701 N
CERS5 Oryzias latipes ENSORLG00000010219 N
ENSPFOG00000013551 Poecilia formosa ENSPFOG00000013551 N
ENSPMAG00000008848 Petromyzon marinus ENSPMAG00000008848 N
ENSSHAG00000001540 Sarcophilus harrisii ENSSHAG00000001540 N
ENSSHAG00000001747 Sarcophilus harrisii ENSSHAG00000001747 N
ENSSHAG00000003870 Sarcophilus harrisii ENSSHAG00000003870 N
cers2a Tetraodon nigroviridis ENSTNIG00000017545 N
cers4b Takifugu rubripes ENSTRUG00000000191 N