Bra007637 (Brassica rapa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Bra007637 T205056_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-12
M00865_2.00 		Arabidopsis thaliana
NNNNNNNN
NNNNNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATHB12 		0.867 0.965
ATHB-12
M02045_2.00 		Arabidopsis thaliana
BHWWWWWWDV
BHWWWWWWDV		 PBM
Weirauch et al.(2014)
pTH7207 		0.867 0.965
ATHB-7
M02043_2.00 		Arabidopsis thaliana
NHWTGATTGN
NCAATCAWDN		 PBM
Weirauch et al.(2014)
pTH8090 		0.666 0.860
ATHB-7
M06911_2.00 		Arabidopsis thaliana
NHYCAATCATTSW
WSAATGATTGRDN		 Dap-seq
OMalley et al.(2016)
ATHB7_col_a 		0.666 0.860
Q39944_HELAN
M10802_2.00 		Helianthus annuus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HAHB4_01 		0.630 0.579
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.618 0.614
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.618 0.614
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra007637.1-P Homeodomain 30 86

Links

Other Homeodomain family TFs
Other Brassica rapa TFs

113 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ATHB-12 Arabidopsis thaliana AT3G61890 D 0.867
Bo8g097390 Brassica oleracea Bo8g097390 I 0.867
ATHB-12 Arabidopsis lyrata fgenesh2_kg.5__2686__AT3G61890.1 I 0.867
Thhalv10006221m.g Eutrema salsugineum Thhalv10006221m.g I 0.840
Bostr.13158s0194 Boechera stricta Bostr.13158s0194 I 0.834
Cagra.0483s0055 Capsella grandiflora Cagra.0483s0055 I 0.834
Carubv10017952m.g Capsella rubella Carubv10017952m.g I 0.834
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I 0.713
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.712
Pm018314 Prunus mume Pm018314 I 0.712
Bo4g100070 Brassica oleracea Bo4g100070 I 0.691
MTR_8g026960 Medicago truncatula MTR_8g026960 I 0.683
Ca_17608 Cicer arietinum Ca_17608 I 0.683
PK03912.1 Cannabis sativa PK03912.1 I 0.681
MDP0000316497 Malus domestica MDP0000316497 I 0.680
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.679
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.679
Si030983m.g Setaria italica Si030983m.g I 0.679
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.679
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.679
Bra014417 Brassica rapa Bra014417 I 0.676
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.675
Eucgr.A01421 Eucalyptus grandis Eucgr.A01421 I 0.675
ATHB-7 Arabidopsis thaliana AT2G46680 D 0.666
scaffold_403638.1 Arabidopsis lyrata scaffold_403638.1 I 0.666
scaffold_403640.1 Arabidopsis lyrata scaffold_403640.1 I 0.666
Bostr.25993s0098 Boechera stricta Bostr.25993s0098 I 0.666
Thhalv10001600m.g Eutrema salsugineum Thhalv10001600m.g I 0.666
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.661
Bo4g007060 Brassica oleracea Bo4g007060 I 0.660
Bra004516 Brassica rapa Bra004516 I 0.660
MDP0000311522 Malus domestica MDP0000311522 I 0.648
PRUPE_ppa011221mg Prunus persica PRUPE_ppa011221mg I 0.642
Pm019693 Prunus mume Pm019693 I 0.642
GLYMA12G18720 Glycine max GLYMA12G18720 I 0.640
POPTR_0001s40540 Populus trichocarpa POPTR_0001s40540 I 0.636
SapurV1A.0207s0080 Salix purpurea SapurV1A.0207s0080 I 0.636
Cagra.0050s0032 Capsella grandiflora Cagra.0050s0032 I 0.633
Carubv10023896m.g Capsella rubella Carubv10023896m.g I 0.633
POPTR_0011s11510 Populus trichocarpa POPTR_0011s11510 I 0.631
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.631
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.631
PGSC0003DMG400018509 Solanum tuberosum PGSC0003DMG400018509 I 0.630
Solyc03g082550.2 Solanum lycopersicum Solyc03g082550.2 I 0.630
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.630
Q39944_HELAN Helianthus annuus Q39944_HELAN D 0.630
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.626
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.626
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.623
PGSC0003DMG400005472 Solanum tuberosum PGSC0003DMG400005472 I 0.622
Solyc06g053220.2 Solanum lycopersicum Solyc06g053220.2 I 0.622
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.620
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I 0.619
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.618
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.618
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.618
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.618
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.618
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.618
TCM_018470 Theobroma cacao TCM_018470 I 0.618
Ca_10527 Cicer arietinum Ca_10527 I 0.618
Cla010510 Citrullus lanatus Cla010510 I 0.618
Pm015861 Prunus mume Pm015861 I 0.618
29822.m003500 Ricinus communis 29822.m003500 I 0.618
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.618
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.618
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.618
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.618
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.618
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.618
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.618
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.618
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.618
MDP0000124827 Malus domestica MDP0000124827 I 0.618
MDP0000737128 Malus domestica MDP0000737128 I 0.618
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.618
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.618
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.618
PK20392.1 Cannabis sativa PK20392.1 D 0.618
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.618
HAT7 Arabidopsis thaliana AT5G15150 I 0.617
Bo2g012410 Brassica oleracea Bo2g012410 I 0.617
Bo3g010120 Brassica oleracea Bo3g010120 I 0.617
Bo9g165360 Brassica oleracea Bo9g165360 I 0.617
Bra006285 Brassica rapa Bra006285 I 0.617
Bra008717 Brassica rapa Bra008717 I 0.617
Bra023506 Brassica rapa Bra023506 I 0.617
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.617
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.617
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.617
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.617
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.617
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.617
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.617
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.610
Cla018641 Citrullus lanatus Cla018641 I 0.609
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.609
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.609
PRUPE_ppa017711mg Prunus persica PRUPE_ppa017711mg I 0.604
Pm011328 Prunus mume Pm011328 I 0.604
MDP0000146339 Malus domestica MDP0000146339 I 0.604
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.603
ATHB-52 Arabidopsis thaliana AT5G53980 I 0.603
Bo2g042250 Brassica oleracea Bo2g042250 I 0.603
Bra022687 Brassica rapa Bra022687 I 0.603
ATHB52 Arabidopsis lyrata fgenesh2_kg.8__1293__AT5G53980.1 I 0.603
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I 0.603
Bostr.26833s0878 Boechera stricta Bostr.26833s0878 I 0.603
Cagra.4622s0007 Capsella grandiflora Cagra.4622s0007 I 0.603
Carubv10027280m.g Capsella rubella Carubv10027280m.g I 0.603
Thhalv10014905m.g Eutrema salsugineum Thhalv10014905m.g I 0.603
TCM_031644 Theobroma cacao TCM_031644 I 0.600
Gorai.002G067100 Gossypium raimondii Gorai.002G067100 I 0.600