MDP0000316497 (Malus domestica)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 MDP0000316497 T229072_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q39944_HELAN
M10802_2.00 		Helianthus annuus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HAHB4_01 		0.697 0.649
ATHB-12
M00865_2.00 		Arabidopsis thaliana
NNNNNNNN
NNNNNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATHB12 		0.680 0.789
ATHB-12
M02045_2.00 		Arabidopsis thaliana
BHWWWWWWDV
BHWWWWWWDV		 PBM
Weirauch et al.(2014)
pTH7207 		0.680 0.789
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.599 0.614
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.599 0.614
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000316497 Homeodomain 34 90

Links

Other Homeodomain family TFs
Other Malus domestica TFs

120 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MTR_8g026960 Medicago truncatula MTR_8g026960 I 0.770
Ca_17608 Cicer arietinum Ca_17608 I 0.770
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.749
Pm018314 Prunus mume Pm018314 I 0.749
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.729
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.729
Si030983m.g Setaria italica Si030983m.g I 0.729
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.729
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.729
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I 0.717
MDP0000311522 Malus domestica MDP0000311522 I 0.716
Bo4g100070 Brassica oleracea Bo4g100070 I 0.707
Thhalv10006221m.g Eutrema salsugineum Thhalv10006221m.g I 0.707
Al_scaffold_0006_290 Arabidopsis lyrata Al_scaffold_0006_290 I 0.700
Bostr.2128s0069 Boechera stricta Bostr.2128s0069 I 0.698
Q39944_HELAN Helianthus annuus Q39944_HELAN D 0.697
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.696
Bra014417 Brassica rapa Bra014417 I 0.692
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.688
ATHB-12 Arabidopsis thaliana AT3G61890 D 0.680
Bo8g097390 Brassica oleracea Bo8g097390 I 0.680
Bra007637 Brassica rapa Bra007637 I 0.680
ATHB-12 Arabidopsis lyrata fgenesh2_kg.5__2686__AT3G61890.1 I 0.680
Bostr.13158s0194 Boechera stricta Bostr.13158s0194 I 0.680
Cagra.0483s0055 Capsella grandiflora Cagra.0483s0055 I 0.680
Carubv10017952m.g Capsella rubella Carubv10017952m.g I 0.680
Carubv10002831m.g Capsella rubella Carubv10002831m.g I 0.674
Eucgr.A01421 Eucalyptus grandis Eucgr.A01421 I 0.674
Cagra.0154s0024 Capsella grandiflora Cagra.0154s0024 I 0.673
GLYMA12G18720 Glycine max GLYMA12G18720 I 0.671
PGSC0003DMG400018509 Solanum tuberosum PGSC0003DMG400018509 I 0.656
Solyc03g082550.2 Solanum lycopersicum Solyc03g082550.2 I 0.656
Carubv10003464m.g Capsella rubella Carubv10003464m.g I 0.646
evm.TU.supercontig_83.103 Carica papaya evm.TU.supercontig_83.103 N 0.643
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.639
POPTR_0002s17680 Populus trichocarpa POPTR_0002s17680 I 0.636
TCM_005074 Theobroma cacao TCM_005074 I 0.636
27964.m000347 Ricinus communis 27964.m000347 I 0.636
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.636
evm.TU.supercontig_144.7 Carica papaya evm.TU.supercontig_144.7 I 0.636
SapurV1A.0003s0740 Salix purpurea SapurV1A.0003s0740 I 0.636
SapurV1A.0162s0050 Salix purpurea SapurV1A.0162s0050 I 0.636
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.634
Gorai.007G111400 Gossypium raimondii Gorai.007G111400 I 0.632
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.631
POPTR_0014s09860 Populus trichocarpa POPTR_0014s09860 I 0.628
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.624
Solyc02g077590.1 Solanum lycopersicum Solyc02g077590.1 I 0.624
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I 0.623
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I 0.620
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I 0.615
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I 0.615
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I 0.614
Thhalv10015784m.g Eutrema salsugineum Thhalv10015784m.g I 0.614
Solyc03g034120.2 Solanum lycopersicum Solyc03g034120.2 I 0.613
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I 0.611
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I 0.611
Carubv10024148m.g Capsella rubella Carubv10024148m.g I 0.611
GLYMA07G05800 Glycine max GLYMA07G05800 I 0.609
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.609
cassava29430.valid.m1 Manihot esculenta cassava29430.valid.m1 I 0.609
cassava29431.valid.m1 Manihot esculenta cassava29431.valid.m1 I 0.609
Aquca_013_00021 Aquilegia coerulea Aquca_013_00021 I 0.608
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.606
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.606
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I 0.605
Cagra.0050s0032 Capsella grandiflora Cagra.0050s0032 I 0.604
Carubv10023896m.g Capsella rubella Carubv10023896m.g I 0.604
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.604
Thhalv10001600m.g Eutrema salsugineum Thhalv10001600m.g I 0.604
PGSC0003DMG400005472 Solanum tuberosum PGSC0003DMG400005472 I 0.603
Solyc06g053220.2 Solanum lycopersicum Solyc06g053220.2 I 0.603
Ciclev10021877m.g Citrus clementina Ciclev10021877m.g I 0.602
orange1.1g025886m.g Citrus sinensis orange1.1g025886m.g I 0.602
evm.TU.supercontig_3.138 Carica papaya evm.TU.supercontig_3.138 I 0.601
HAT7 Arabidopsis thaliana AT5G15150 I 0.600
Bo2g012410 Brassica oleracea Bo2g012410 I 0.600
Bo3g010120 Brassica oleracea Bo3g010120 I 0.600
Bra006285 Brassica rapa Bra006285 I 0.600
Bra023506 Brassica rapa Bra023506 I 0.600
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.600
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.600
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.600
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.600
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.600
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.600
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.600
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.600
Bo9g165360 Brassica oleracea Bo9g165360 I 0.599
Bra008717 Brassica rapa Bra008717 I 0.599
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.599
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.599
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.599
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.599
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.599
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.599
TCM_018470 Theobroma cacao TCM_018470 I 0.599
Ca_10527 Cicer arietinum Ca_10527 I 0.599
Cla010510 Citrullus lanatus Cla010510 I 0.599
Pm015861 Prunus mume Pm015861 I 0.599
29822.m003500 Ricinus communis 29822.m003500 I 0.599
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.599
cassava29803.valid.m1 Manihot esculenta cassava29803.valid.m1 I 0.599
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.599
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.599
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.599
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.599
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.599
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.599
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.599
Gorai.001G152200 Gossypium raimondii Gorai.001G152200 I 0.599
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.599
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.599
MDP0000124827 Malus domestica MDP0000124827 I 0.599
MDP0000737128 Malus domestica MDP0000737128 I 0.599
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.599
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.599
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.599
PK20392.1 Cannabis sativa PK20392.1 D 0.599
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.599