Solyc02g077590.1 (Solanum lycopersicum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Solyc02g077590.1 T223550_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.670 0.596
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.670 0.596
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.668 0.596
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.668 0.596
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.668 0.596
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.650 0.579
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.650 0.579
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.645 0.509
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc02g077590.1.1 Homeodomain 14 70

Links

Other Homeodomain family TFs
Other Solanum lycopersicum TFs

178 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.822
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.743
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I 0.741
VIT_10s0003g00380 Vitis vinifera VIT_10s0003g00380 I 0.730
Eucgr.A01421 Eucalyptus grandis Eucgr.A01421 I 0.723
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.721
MDP0000909160 Malus domestica MDP0000909160 I 0.713
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.710
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.710
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.710
Si030983m.g Setaria italica Si030983m.g I 0.710
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.710
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.710
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.709
Pm018314 Prunus mume Pm018314 I 0.709
Gorai.002G067100 Gossypium raimondii Gorai.002G067100 I 0.708
TCM_031644 Theobroma cacao TCM_031644 I 0.707
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.698
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.696
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I 0.696
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.694
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.692
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.689
PRUPE_ppa017711mg Prunus persica PRUPE_ppa017711mg I 0.683
Pm011328 Prunus mume Pm011328 I 0.683
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I 0.682
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I 0.682
PGSC0003DMG402012439 Solanum tuberosum PGSC0003DMG402012439 I 0.680
Solyc07g062790.1 Solanum lycopersicum Solyc07g062790.1 I 0.677
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.677
mgf025174m Mimulus guttatus mgf025174m I 0.676
Lus10003492.g Linum usitatissimum Lus10003492.g I 0.676
Lus10013103.g Linum usitatissimum Lus10013103.g I 0.676
MDP0000146339 Malus domestica MDP0000146339 I 0.676
MDP0000311522 Malus domestica MDP0000311522 I 0.676
POPTR_0017s04820 Populus trichocarpa POPTR_0017s04820 I 0.675
29983.m003123 Ricinus communis 29983.m003123 I 0.675
mgf013301m Mimulus guttatus mgf013301m I 0.675
SapurV1A.2554s0010 Salix purpurea SapurV1A.2554s0010 I 0.675
SapurV1A.3101s0010 Salix purpurea SapurV1A.3101s0010 I 0.675
HAT7 Arabidopsis thaliana AT5G15150 I 0.672
Bo2g012410 Brassica oleracea Bo2g012410 I 0.672
Bo3g010120 Brassica oleracea Bo3g010120 I 0.672
Bra006285 Brassica rapa Bra006285 I 0.672
Bra023506 Brassica rapa Bra023506 I 0.672
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.672
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.672
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.672
POPTR_0001s40540 Populus trichocarpa POPTR_0001s40540 I 0.672
POPTR_0011s11510 Populus trichocarpa POPTR_0011s11510 I 0.672
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.672
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.672
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.672
SapurV1A.0207s0080 Salix purpurea SapurV1A.0207s0080 I 0.672
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.672
Bo9g165360 Brassica oleracea Bo9g165360 I 0.670
Bra008717 Brassica rapa Bra008717 I 0.670
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.670
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.670
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.670
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.670
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.670
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.670
TCM_018470 Theobroma cacao TCM_018470 I 0.670
Ca_10527 Cicer arietinum Ca_10527 I 0.670
Cla010510 Citrullus lanatus Cla010510 I 0.670
Pm015861 Prunus mume Pm015861 I 0.670
29822.m003500 Ricinus communis 29822.m003500 I 0.670
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.670
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.670
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.670
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.670
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.670
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.670
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.670
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.670
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.670
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.670
MDP0000124827 Malus domestica MDP0000124827 I 0.670
MDP0000737128 Malus domestica MDP0000737128 I 0.670
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.670
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.670
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.670
PK20392.1 Cannabis sativa PK20392.1 D 0.670
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.670
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.668
Bo3g002560 Brassica oleracea Bo3g002560 I 0.668
Bo9g181720 Brassica oleracea Bo9g181720 I 0.668
Bra009510 Brassica rapa Bra009510 I 0.668
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.668
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.668
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.668
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.668
Carubv10003464m.g Capsella rubella Carubv10003464m.g I 0.668
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.668
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.667
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.665
gene24976-v1.0-hybrid Fragaria vesca gene24976-v1.0-hybrid I 0.664
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I 0.663
SapurV1A.0226s0110 Salix purpurea SapurV1A.0226s0110 I 0.663
Cla018641 Citrullus lanatus Cla018641 I 0.662
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.662
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.659
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.659
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.659
mgf022748m Mimulus guttatus mgf022748m I 0.659
GLYMA10G07440 Glycine max GLYMA10G07440 I 0.658
GLYMA13G21330 Glycine max GLYMA13G21330 I 0.658
POPTR_0006s11890 Populus trichocarpa POPTR_0006s11890 I 0.658
PRUPE_ppa015952mg Prunus persica PRUPE_ppa015952mg I 0.658
TCM_022391 Theobroma cacao TCM_022391 I 0.658
Cla018017 Citrullus lanatus Cla018017 I 0.658
Pm026270 Prunus mume Pm026270 I 0.658
29815.m000499 Ricinus communis 29815.m000499 I 0.658
cassava14646.m1 Manihot esculenta cassava14646.m1 I 0.658
cassava34082.m1 Manihot esculenta cassava34082.m1 I 0.658
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.658
mgf019824m Mimulus guttatus mgf019824m I 0.658
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I 0.658
evm.TU.supercontig_5.106 Carica papaya evm.TU.supercontig_5.106 I 0.658
Gorai.002G244200 Gossypium raimondii Gorai.002G244200 I 0.658
Gorai.009G409600 Gossypium raimondii Gorai.009G409600 I 0.658
Lus10008641.g Linum usitatissimum Lus10008641.g I 0.658
Lus10035583.g Linum usitatissimum Lus10035583.g I 0.658
MDP0000119544 Malus domestica MDP0000119544 I 0.658
MDP0000134241 Malus domestica MDP0000134241 I 0.658
MDP0000738604 Malus domestica MDP0000738604 I 0.658
Thhalv10015784m.g Eutrema salsugineum Thhalv10015784m.g I 0.658
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.658
ATHB-52 Arabidopsis thaliana AT5G53980 I 0.657
ATHB52 Arabidopsis lyrata fgenesh2_kg.8__1293__AT5G53980.1 I 0.657
Bo2g005230 Brassica oleracea Bo2g005230 I 0.656
Bra028820 Brassica rapa Bra028820 I 0.656
PGSC0003DMG400021278 Solanum tuberosum PGSC0003DMG400021278 I 0.655
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.650
Bo1g158730 Brassica oleracea Bo1g158730 I 0.650
Bra039135 Brassica rapa Bra039135 I 0.650
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.650
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.650
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.650
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.650
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.650
gene30097-v1.0-hybrid Fragaria vesca gene30097-v1.0-hybrid I 0.646
PK15535.1 Cannabis sativa PK15535.1 I 0.646
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.645
Bo4g034490 Brassica oleracea Bo4g034490 I 0.645
Bra005259 Brassica rapa Bra005259 I 0.645
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I 0.645
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I 0.645
Carubv10024148m.g Capsella rubella Carubv10024148m.g I 0.645
GLYMA13G05270 Glycine max GLYMA13G05270 I 0.641
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I 0.639
POPTR_0007s01370 Populus trichocarpa POPTR_0007s01370 I 0.637
Ciclev10009522m.g Citrus clementina Ciclev10009522m.g I 0.637
orange1.1g035661m.g Citrus sinensis orange1.1g035661m.g I 0.637
Bo12274s010 Brassica oleracea Bo12274s010 I 0.636
Pavir.Hb01447 Panicum virgatum Pavir.Hb01447 I 0.633
Bo2g042250 Brassica oleracea Bo2g042250 I 0.630
Bra022687 Brassica rapa Bra022687 I 0.630
Eucgr.A01575 Eucalyptus grandis Eucgr.A01575 I 0.630
PGSC0003DMG400018509 Solanum tuberosum PGSC0003DMG400018509 I 0.625
Solyc03g082550.2 Solanum lycopersicum Solyc03g082550.2 I 0.625
Bostr.26833s0878 Boechera stricta Bostr.26833s0878 I 0.625
Cagra.4622s0007 Capsella grandiflora Cagra.4622s0007 I 0.625
Carubv10027280m.g Capsella rubella Carubv10027280m.g I 0.625
Thhalv10014905m.g Eutrema salsugineum Thhalv10014905m.g I 0.625
Thhalv10017567m.g Eutrema salsugineum Thhalv10017567m.g I 0.625
MDP0000316497 Malus domestica MDP0000316497 I 0.624
Bo4g100070 Brassica oleracea Bo4g100070 I 0.623
Bra014417 Brassica rapa Bra014417 I 0.623
Thhalv10006221m.g Eutrema salsugineum Thhalv10006221m.g I 0.623
MTR_8g026960 Medicago truncatula MTR_8g026960 I 0.619
Ca_17608 Cicer arietinum Ca_17608 I 0.619
GLYMA03G34710 Glycine max GLYMA03G34710 I 0.613
GLYMA19G37380 Glycine max GLYMA19G37380 I 0.613
evm.TU.supercontig_83.103 Carica papaya evm.TU.supercontig_83.103 N 0.608
SapurV1A.0118s0340 Salix purpurea SapurV1A.0118s0340 N 0.607
Aquca_036_00050 Aquilegia coerulea Aquca_036_00050 N 0.606