Bra009510 (Brassica rapa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Bra009510 T205066_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.867 0.982
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.867 0.982
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.867 0.982
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.779 0.732
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.711 0.589
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.711 0.589
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.691 0.589
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.691 0.589
estExt_gwp_gw1.C_70211
M02220_2.00 		Physcomitrella patens
HMATNANDNN
NNHNTNATKD		 PBM
Weirauch et al.(2014)
pTH8489 		0.602 0.643
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra009510.1-P Homeodomain 76 131

Links

Other Homeodomain family TFs
Other Brassica rapa TFs

253 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.867
Bo9g181720 Brassica oleracea Bo9g181720 I 0.867
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.867
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.867
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.867
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.834
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.834
Bo3g002560 Brassica oleracea Bo3g002560 I 0.830
Cla018017 Citrullus lanatus Cla018017 I 0.823
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.823
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.821
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.821
Bo2g005230 Brassica oleracea Bo2g005230 I 0.818
Bra028820 Brassica rapa Bra028820 I 0.818
mgf019824m Mimulus guttatus mgf019824m I 0.811
mgf022748m Mimulus guttatus mgf022748m I 0.795
POPTR_0006s11890 Populus trichocarpa POPTR_0006s11890 I 0.791
29815.m000499 Ricinus communis 29815.m000499 I 0.791
cassava14646.m1 Manihot esculenta cassava14646.m1 I 0.791
Gorai.002G244200 Gossypium raimondii Gorai.002G244200 I 0.791
MDP0000119544 Malus domestica MDP0000119544 I 0.790
MDP0000134241 Malus domestica MDP0000134241 I 0.790
MDP0000738604 Malus domestica MDP0000738604 I 0.790
PRUPE_ppa015952mg Prunus persica PRUPE_ppa015952mg I 0.787
TCM_022391 Theobroma cacao TCM_022391 I 0.787
Pm026270 Prunus mume Pm026270 I 0.787
cassava34082.m1 Manihot esculenta cassava34082.m1 I 0.787
evm.TU.supercontig_5.106 Carica papaya evm.TU.supercontig_5.106 I 0.787
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I 0.787
Gorai.009G409600 Gossypium raimondii Gorai.009G409600 I 0.787
Lus10008641.g Linum usitatissimum Lus10008641.g I 0.787
Lus10035583.g Linum usitatissimum Lus10035583.g I 0.787
Carubv10003464m.g Capsella rubella Carubv10003464m.g I 0.780
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.779
SapurV1A.0226s0110 Salix purpurea SapurV1A.0226s0110 I 0.778
gene30097-v1.0-hybrid Fragaria vesca gene30097-v1.0-hybrid I 0.776
PK15535.1 Cannabis sativa PK15535.1 I 0.776
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I 0.771
Thhalv10017567m.g Eutrema salsugineum Thhalv10017567m.g I 0.768
GLYMA10G07440 Glycine max GLYMA10G07440 I 0.765
GLYMA13G21330 Glycine max GLYMA13G21330 I 0.765
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.764
Cla018641 Citrullus lanatus Cla018641 I 0.761
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.761
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.761
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I 0.759
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I 0.759
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I 0.756
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I 0.756
Carubv10024148m.g Capsella rubella Carubv10024148m.g I 0.756
Thhalv10015784m.g Eutrema salsugineum Thhalv10015784m.g I 0.756
Bo4g034490 Brassica oleracea Bo4g034490 I 0.748
Bra005259 Brassica rapa Bra005259 I 0.748
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I 0.742
Eucgr.A01575 Eucalyptus grandis Eucgr.A01575 I 0.737
Al_scaffold_0006_290 Arabidopsis lyrata Al_scaffold_0006_290 I 0.721
Bostr.2128s0069 Boechera stricta Bostr.2128s0069 I 0.719
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.718
HAT7 Arabidopsis thaliana AT5G15150 I 0.711
Bo2g012410 Brassica oleracea Bo2g012410 I 0.711
Bo3g010120 Brassica oleracea Bo3g010120 I 0.711
Bo9g165360 Brassica oleracea Bo9g165360 I 0.711
Bra006285 Brassica rapa Bra006285 I 0.711
Bra008717 Brassica rapa Bra008717 I 0.711
Bra023506 Brassica rapa Bra023506 I 0.711
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.711
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.711
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.711
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.711
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.711
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.711
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.711
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.711
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.711
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.711
TCM_018470 Theobroma cacao TCM_018470 I 0.711
Ca_10527 Cicer arietinum Ca_10527 I 0.711
Cla010510 Citrullus lanatus Cla010510 I 0.711
Pm015861 Prunus mume Pm015861 I 0.711
29822.m003500 Ricinus communis 29822.m003500 I 0.711
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.711
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.711
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.711
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.711
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.711
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.711
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.711
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.711
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.711
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.711
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.711
MDP0000124827 Malus domestica MDP0000124827 I 0.711
MDP0000737128 Malus domestica MDP0000737128 I 0.711
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.711
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.711
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.711
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.711
PK20392.1 Cannabis sativa PK20392.1 D 0.711
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.711
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.709
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.707
Cagra.0154s0024 Capsella grandiflora Cagra.0154s0024 I 0.706
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.705
Carubv10002831m.g Capsella rubella Carubv10002831m.g I 0.705
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.704
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.703
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.692
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.691
Bo1g158730 Brassica oleracea Bo1g158730 I 0.691
Bra039135 Brassica rapa Bra039135 I 0.691
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.691
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.691
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.691
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.691
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.691
Ca_20151 Cicer arietinum Ca_20151 I 0.689
Bo12274s010 Brassica oleracea Bo12274s010 I 0.687
Cagra.4622s0007 Capsella grandiflora Cagra.4622s0007 I 0.683
Carubv10027280m.g Capsella rubella Carubv10027280m.g I 0.683
GLYMA13G05270 Glycine max GLYMA13G05270 I 0.678
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.678
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.677
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.673
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.673
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.673
Si030983m.g Setaria italica Si030983m.g I 0.673
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.673
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.673
MTR_7g103340 Medicago truncatula MTR_7g103340 I 0.670
Eucgr.A01421 Eucalyptus grandis Eucgr.A01421 I 0.670
SapurV1A.3101s0010 Salix purpurea SapurV1A.3101s0010 I 0.669
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.668
Solyc02g077590.1 Solanum lycopersicum Solyc02g077590.1 I 0.668
GLYMA19G37380 Glycine max GLYMA19G37380 I 0.667
Ca_00750 Cicer arietinum Ca_00750 I 0.667
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.666
Pm018314 Prunus mume Pm018314 I 0.666
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I 0.666
POPTR_0017s04820 Populus trichocarpa POPTR_0017s04820 I 0.665
29983.m003123 Ricinus communis 29983.m003123 I 0.665
SapurV1A.2554s0010 Salix purpurea SapurV1A.2554s0010 I 0.665
Ciclev10009522m.g Citrus clementina Ciclev10009522m.g I 0.655
orange1.1g035661m.g Citrus sinensis orange1.1g035661m.g I 0.655
ATHB-52 Arabidopsis thaliana AT5G53980 I 0.652
Bo2g042250 Brassica oleracea Bo2g042250 I 0.652
Bra022687 Brassica rapa Bra022687 I 0.652
ATHB52 Arabidopsis lyrata fgenesh2_kg.8__1293__AT5G53980.1 I 0.652
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.652
Bostr.26833s0878 Boechera stricta Bostr.26833s0878 I 0.652
Thhalv10014905m.g Eutrema salsugineum Thhalv10014905m.g I 0.652
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.647
VIT_10s0003g00380 Vitis vinifera VIT_10s0003g00380 I 0.647
GLYMA03G34710 Glycine max GLYMA03G34710 I 0.644
Pavir.Hb01447 Panicum virgatum Pavir.Hb01447 I 0.643
Gorai.007G206000 Gossypium raimondii Gorai.007G206000 I 0.639
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I 0.638
Gorai.012G055400 Gossypium raimondii Gorai.012G055400 I 0.635
MDP0000311522 Malus domestica MDP0000311522 I 0.633
PGSC0003DMG400021278 Solanum tuberosum PGSC0003DMG400021278 I 0.628
POPTR_0001s40540 Populus trichocarpa POPTR_0001s40540 I 0.626
POPTR_0011s11510 Populus trichocarpa POPTR_0011s11510 I 0.626
PRUPE_ppa017711mg Prunus persica PRUPE_ppa017711mg I 0.626
TCM_031644 Theobroma cacao TCM_031644 I 0.626
Pm011328 Prunus mume Pm011328 I 0.626
mgf013301m Mimulus guttatus mgf013301m I 0.626
Gorai.002G067100 Gossypium raimondii Gorai.002G067100 I 0.626
Lus10003492.g Linum usitatissimum Lus10003492.g I 0.626
Lus10013103.g Linum usitatissimum Lus10013103.g I 0.626
SapurV1A.0207s0080 Salix purpurea SapurV1A.0207s0080 I 0.626
SapurV1A.0817s0120 Salix purpurea SapurV1A.0817s0120 I 0.626
POPTR_0007s01370 Populus trichocarpa POPTR_0007s01370 I 0.625
MDP0000146339 Malus domestica MDP0000146339 I 0.624
MDP0000909160 Malus domestica MDP0000909160 I 0.624
Bo9g181710 Brassica oleracea Bo9g181710 I 0.623
GSMUA_Achr9G14960_001 Musa acuminata GSMUA_Achr9G14960_001 I 0.619
PGSC0003DMG400018509 Solanum tuberosum PGSC0003DMG400018509 I 0.619
Solyc03g082550.2 Solanum lycopersicum Solyc03g082550.2 I 0.619
Solyc06g053220.2 Solanum lycopersicum Solyc06g053220.2 I 0.618
Solyc07g062790.1 Solanum lycopersicum Solyc07g062790.1 I 0.616
PGSC0003DMG402012439 Solanum tuberosum PGSC0003DMG402012439 I 0.615
Bo4g100070 Brassica oleracea Bo4g100070 I 0.613
AMTR_s00059p00141510 Amborella trichopoda AMTR_s00059p00141510 I 0.612
PGSC0003DMG400005472 Solanum tuberosum PGSC0003DMG400005472 I 0.612
ATHB-23 Arabidopsis thaliana AT1G26960 I 0.611
Bo8g076330 Brassica oleracea Bo8g076330 I 0.611
Bra016300 Brassica rapa Bra016300 I 0.611
Bra018155 Brassica rapa Bra018155 I 0.611
AtHB23 Arabidopsis lyrata fgenesh2_kg.1__2657__AT1G26960.1 I 0.611
PGSC0003DMG400017775 Solanum tuberosum PGSC0003DMG400017775 I 0.611
PGSC0003DMG400017776 Solanum tuberosum PGSC0003DMG400017776 I 0.611
PGSC0003DMG400017787 Solanum tuberosum PGSC0003DMG400017787 I 0.611
Solyc03g034110.2 Solanum lycopersicum Solyc03g034110.2 I 0.611
mgf025174m Mimulus guttatus mgf025174m I 0.611
Bostr.12659s0299 Boechera stricta Bostr.12659s0299 I 0.611
Cagra.1150s0002 Capsella grandiflora Cagra.1150s0002 I 0.611
Carubv10010076m.g Capsella rubella Carubv10010076m.g I 0.611
Thhalv10008487m.g Eutrema salsugineum Thhalv10008487m.g I 0.611
e_gw1.34.11.1 Physcomitrella patens e_gw1.34.11.1 I 0.607
Solyc03g034130.2 Solanum lycopersicum Solyc03g034130.2 I 0.605
gene24976-v1.0-hybrid Fragaria vesca gene24976-v1.0-hybrid I 0.605
AT1G27045 Arabidopsis thaliana AT1G27045 I 0.604
Cla014413 Citrullus lanatus Cla014413 I 0.603
Cucsa.104950 Cucumis sativus Cucsa.104950 I 0.603
GSMUA_Achr10G24810_001 Musa acuminata GSMUA_Achr10G24810_001 I 0.602
GSMUA_Achr10G30330_001 Musa acuminata GSMUA_Achr10G30330_001 I 0.602
GSMUA_Achr6G10310_001 Musa acuminata GSMUA_Achr6G10310_001 I 0.602
MTR_8g089895 Medicago truncatula MTR_8g089895 I 0.602
PGSC0003DMG400016148 Solanum tuberosum PGSC0003DMG400016148 I 0.602
Sb07g029150 Sorghum bicolor Sb07g029150 I 0.602
SELMODRAFT_108871 Selaginella moellendorffii SELMODRAFT_108871 I 0.602
SELMODRAFT_18196 Selaginella moellendorffii SELMODRAFT_18196 I 0.602
SELMODRAFT_19476 Selaginella moellendorffii SELMODRAFT_19476 I 0.602
SELMODRAFT_97273 Selaginella moellendorffii SELMODRAFT_97273 I 0.602
Solyc11g010270.1 Solanum lycopersicum Solyc11g010270.1 I 0.602
VIT_07s0191g00180 Vitis vinifera VIT_07s0191g00180 I 0.602
Cla014344 Citrullus lanatus Cla014344 I 0.602
Cucsa.104200 Cucumis sativus Cucsa.104200 I 0.602
e_gw1.31.11.1 Physcomitrella patens e_gw1.31.11.1 I 0.602
e_gw1.431.18.1 Physcomitrella patens e_gw1.431.18.1 I 0.602
e_gw1.65.5.1 Physcomitrella patens e_gw1.65.5.1 I 0.602
estExt_fgenesh2_pm.C_1080004 Physcomitrella patens estExt_fgenesh2_pm.C_1080004 I 0.602
estExt_gwp_gw1.C_70211 Physcomitrella patens estExt_gwp_gw1.C_70211 D 0.602
gw1.28.15.1 Physcomitrella patens gw1.28.15.1 I 0.602
gw1.34.13.1 Physcomitrella patens gw1.34.13.1 I 0.602
gw1.65.7.1 Physcomitrella patens gw1.65.7.1 I 0.602
gw1.77.4.1 Physcomitrella patens gw1.77.4.1 I 0.602
Eucgr.H04742 Eucalyptus grandis Eucgr.H04742 I 0.602
evm.TU.supercontig_55.70 Carica papaya evm.TU.supercontig_55.70 I 0.602
Gorai.011G111500 Gossypium raimondii Gorai.011G111500 I 0.602
Lus10023159.g Linum usitatissimum Lus10023159.g I 0.602
Solyc03g034120.2 Solanum lycopersicum Solyc03g034120.2 I 0.601
GSMUA_Achr7G12740_001 Musa acuminata GSMUA_Achr7G12740_001 I 0.600
SELMODRAFT_129907 Selaginella moellendorffii SELMODRAFT_129907 I 0.600
SELMODRAFT_81609 Selaginella moellendorffii SELMODRAFT_81609 I 0.600
AC233899.1_FG004 Zea mays AC233899.1_FG004 I 0.599
AMTR_s00040p00235500 Amborella trichopoda AMTR_s00040p00235500 I 0.599
Bo3g153930 Brassica oleracea Bo3g153930 I 0.599
MTR_5g019650 Medicago truncatula MTR_5g019650 I 0.599
MTR_5g019680 Medicago truncatula MTR_5g019680 I 0.599
PRUPE_ppa011343mg Prunus persica PRUPE_ppa011343mg I 0.599
Ca_02070 Cicer arietinum Ca_02070 I 0.599
Cla014769 Citrullus lanatus Cla014769 I 0.599
Pm026578 Prunus mume Pm026578 I 0.599
cassava4525.m1 Manihot esculenta cassava4525.m1 I 0.599
cassava45495.m1 Manihot esculenta cassava45495.m1 I 0.599
Cucsa.201240 Cucumis sativus Cucsa.201240 I 0.599
Aquca_007_00158 Aquilegia coerulea Aquca_007_00158 I 0.599
Gorai.003G016600 Gossypium raimondii Gorai.003G016600 I 0.599
Gorai.007G051100 Gossypium raimondii Gorai.007G051100 I 0.599
Lus10024031.g Linum usitatissimum Lus10024031.g I 0.599
Lus10041719.g Linum usitatissimum Lus10041719.g I 0.599
MDP0000230511 Malus domestica MDP0000230511 I 0.599
SapurV1A.0255s0060 Salix purpurea SapurV1A.0255s0060 I 0.599